RNA–Protein interactions for RNA: ENST00000569128.1

CDH11-216, Transcript of cadherin 11, humanhuman

TSL 3

Gene CDH11, Length 781 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11-216ENST00000569128 PODXL2Q9NZ53 605 aa12.96□□□□□ -0.33
CDH11-216ENST00000569128 TARBP1Q13395 1621 aaKnown RBP12.95□□□□□ -0.34
CDH11-216ENST00000569128 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.95□□□□□ -0.34
CDH11-216ENST00000569128 TDRD9Q8NDG6 1382 aaKnown RBP12.94□□□□□ -0.34
CDH11-216ENST00000569128 NDUFV2P19404 249 aa12.94□□□□□ -0.34
CDH11-216ENST00000569128 STAC3Q96MF2 364 aa12.94□□□□□ -0.34
CDH11-216ENST00000569128 IFT140Q96RY7 1462 aa12.93□□□□□ -0.34
CDH11-216ENST00000569128 SPTLC1O15269 473 aa12.93□□□□□ -0.34
CDH11-216ENST00000569128 RSBN1LQ6PCB5 846 aaPredicted RBP12.93□□□□□ -0.34
CDH11-216ENST00000569128 ABCA10Q8WWZ4 1543 aa12.93□□□□□ -0.34
CDH11-216ENST00000569128 ZNF608Q9ULD9 1512 aaPredicted RBP12.93□□□□□ -0.34
CDH11-216ENST00000569128 CSPP1Q1MSJ5 1256 aa12.92□□□□□ -0.34
CDH11-216ENST00000569128 CFHP08603 1231 aa12.91□□□□□ -0.34
CDH11-216ENST00000569128 LRCH3Q96II8 777 aa12.91□□□□□ -0.34
CDH11-216ENST00000569128 WDR97A6NE52 1622 aa12.91□□□□□ -0.34
CDH11-216ENST00000569128 AQRO60306 1485 aaKnown RBP eCLIP12.91□□□□□ -0.34
CDH11-216ENST00000569128 GOLGA8CPA6NN73 597 aa12.9□□□□□ -0.34
CDH11-216ENST00000569128 USP46P62068 366 aa12.9□□□□□ -0.34
CDH11-216ENST00000569128 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.9□□□□□ -0.34
CDH11-216ENST00000569128 HOXA2O43364 376 aa12.89□□□□□ -0.35
CDH11-216ENST00000569128 FBXO31Q5XUX0 539 aaPredicted RBP12.89□□□□□ -0.35
CDH11-216ENST00000569128 HLA-CQ95604 372 aa12.88□□□□□ -0.35
CDH11-216ENST00000569128 KRTAP3-3Q9BYR6 98 aa12.88□□□□□ -0.35
CDH11-216ENST00000569128 KRTAP3-2Q9BYR7 98 aa12.88□□□□□ -0.35
CDH11-216ENST00000569128 PCDHB15Q9Y5E8 787 aa12.88□□□□□ -0.35
CDH11-216ENST00000569128 KIF27Q86VH2 1401 aa12.88□□□□□ -0.35
CDH11-216ENST00000569128 ANKK1Q8NFD2 765 aa12.87□□□□□ -0.35
CDH11-216ENST00000569128 GJA5P36382 358 aa12.86□□□□□ -0.35
CDH11-216ENST00000569128 RANGAP1P46060 587 aaPredicted RBP12.86□□□□□ -0.35
CDH11-216ENST00000569128 GUCA2AQ02747 115 aa12.86□□□□□ -0.35
CDH11-216ENST00000569128 FUT2Q10981 343 aa12.86□□□□□ -0.35
CDH11-216ENST00000569128 QPCTQ16769 361 aa12.86□□□□□ -0.35
CDH11-216ENST00000569128 TUSC1Q2TAM9 212 aa12.86□□□□□ -0.35
CDH11-216ENST00000569128 GAPVD1Q14C86 1478 aa12.85□□□□□ -0.35
CDH11-216ENST00000569128 RFC5P40937 340 aa12.85□□□□□ -0.35
CDH11-216ENST00000569128 FLIIQ13045 1269 aa12.85□□□□□ -0.35
CDH11-216ENST00000569128 IGF1RP08069 1367 aa12.84□□□□□ -0.35
CDH11-216ENST00000569128 FDX1P10109 184 aa12.84□□□□□ -0.35
CDH11-216ENST00000569128 UBTFP17480 764 aaKnown RBP12.84□□□□□ -0.35
CDH11-216ENST00000569128 BCAMP50895 628 aa12.84□□□□□ -0.35
CDH11-216ENST00000569128 PLSCR2Q9NRY7 297 aa12.84□□□□□ -0.35
CDH11-216ENST00000569128 ABCA5Q8WWZ7 1642 aa12.84□□□□□ -0.35
CDH11-216ENST00000569128 KMT5BQ4FZB7 885 aa12.83□□□□□ -0.36
CDH11-216ENST00000569128 PPP2R2DQ66LE6 453 aa12.83□□□□□ -0.36
CDH11-216ENST00000569128 CABLES1Q8TDN4 633 aa12.83□□□□□ -0.36
CDH11-216ENST00000569128 WNT2BQ93097 391 aa12.83□□□□□ -0.36
CDH11-216ENST00000569128 ZMYND15Q9H091 742 aa12.83□□□□□ -0.36
CDH11-216ENST00000569128 EIF4G3O43432 1585 aaKnown RBP12.82□□□□□ -0.36
CDH11-216ENST00000569128 SOWAHBA6NEL2 793 aa12.82□□□□□ -0.36
CDH11-216ENST00000569128 LILRB3O75022 631 aa12.82□□□□□ -0.36
CDH11-216ENST00000569128 PCDHGC3Q9UN70 934 aa12.82□□□□□ -0.36
CDH11-216ENST00000569128 HPS5Q9UPZ3 1129 aa12.82□□□□□ -0.36
CDH11-216ENST00000569128 EEA1Q15075 1411 aa12.81□□□□□ -0.36
CDH11-216ENST00000569128 NUTM2BA6NNL0 878 aaPredicted RBP12.81□□□□□ -0.36
CDH11-216ENST00000569128 NUTM2EB1AL46 878 aaPredicted RBP12.81□□□□□ -0.36
CDH11-216ENST00000569128 NUTM2DQ5VT03 806 aaPredicted RBP12.81□□□□□ -0.36
CDH11-216ENST00000569128 NUTM2AQ8IVF1 878 aaPredicted RBP12.81□□□□□ -0.36
CDH11-216ENST00000569128 NECTIN2Q92692 538 aa12.81□□□□□ -0.36
CDH11-216ENST00000569128 LOC105371045A0A1W2PR82 267 aa12.8□□□□□ -0.36
CDH11-216ENST00000569128 ATP6V1AP38606 617 aa12.8□□□□□ -0.36
CDH11-216ENST00000569128 GRIPAP1Q4V328 841 aa12.8□□□□□ -0.36
CDH11-216ENST00000569128 RTL5Q5HYW3 569 aaPredicted RBP12.8□□□□□ -0.36
CDH11-216ENST00000569128 PPP4CP60510 307 aa12.79□□□□□ -0.36
CDH11-216ENST00000569128 MCM6Q14566 821 aa12.79□□□□□ -0.36
CDH11-216ENST00000569128 POTEGQ6S5H5 508 aa12.79□□□□□ -0.36
CDH11-216ENST00000569128 GRIN2BQ13224 1484 aa12.78□□□□□ -0.36
CDH11-216ENST00000569128 HRCP23327 699 aa12.78□□□□□ -0.36
CDH11-216ENST00000569128 PRPF38BQ5VTL8 546 aaKnown RBP12.78□□□□□ -0.36
CDH11-216ENST00000569128 ZBTB3Q9H5J0 574 aa12.78□□□□□ -0.36
CDH11-216ENST00000569128 PBRM1Q86U86 1689 aa12.77□□□□□ -0.36
CDH11-216ENST00000569128 ACTN4O43707 911 aaKnown RBP12.77□□□□□ -0.37
CDH11-216ENST00000569128 PUS10Q3MIT2 529 aaKnown RBP12.77□□□□□ -0.37
CDH11-216ENST00000569128 TMEM259Q4ZIN3 620 aa12.77□□□□□ -0.37
CDH11-216ENST00000569128 TSR3Q9UJK0 312 aaKnown RBP12.77□□□□□ -0.37
CDH11-216ENST00000569128 CDAN1Q8IWY9 1227 aa12.76□□□□□ -0.37
CDH11-216ENST00000569128 CARMIL1Q5VZK9 1371 aa12.76□□□□□ -0.37
CDH11-216ENST00000569128 POTEMA6NI47 508 aa12.75□□□□□ -0.37
CDH11-216ENST00000569128 ERICH3Q5RHP9 1530 aa12.75□□□□□ -0.37
CDH11-216ENST00000569128 SNAPC4Q5SXM2 1469 aa12.75□□□□□ -0.37
CDH11-216ENST00000569128 C6orf229H3BNL8 230 aa12.74□□□□□ -0.37
CDH11-216ENST00000569128 AP1G2O75843 785 aa12.74□□□□□ -0.37
CDH11-216ENST00000569128 APLP1P51693 650 aa12.74□□□□□ -0.37
CDH11-216ENST00000569128 BANK1Q8NDB2 785 aa12.74□□□□□ -0.37
CDH11-216ENST00000569128 PRR14Q9BWN1 585 aa12.74□□□□□ -0.37
CDH11-216ENST00000569128 SNRKQ9NRH2 765 aa12.74□□□□□ -0.37
CDH11-216ENST00000569128 PRXQ9BXM0 1461 aa12.73□□□□□ -0.37
CDH11-216ENST00000569128 MTMR2Q13614 643 aa12.73□□□□□ -0.37
CDH11-216ENST00000569128 MORN1Q5T089 497 aa12.73□□□□□ -0.37
CDH11-216ENST00000569128 SYMPKQ92797 1274 aaKnown RBP12.73□□□□□ -0.37
CDH11-216ENST00000569128 WBP1LQ9NX94 342 aa12.73□□□□□ -0.37
CDH11-216ENST00000569128 KCTD12Q96CX2 325 aaKnown RBP12.72□□□□□ -0.37
CDH11-216ENST00000569128 RAPGEF2Q9Y4G8 1499 aa12.72□□□□□ -0.37
CDH11-216ENST00000569128 SPDYE5A6NIY4 337 aa12.71□□□□□ -0.37
CDH11-216ENST00000569128 CLUAP1Q96AJ1 413 aa12.71□□□□□ -0.37
CDH11-216ENST00000569128 SLC27A5Q9Y2P5 690 aa12.71□□□□□ -0.37
CDH11-216ENST00000569128 TRIM26Q12899 539 aaPredicted RBP12.7□□□□□ -0.38
CDH11-216ENST00000569128 THSD4Q6ZMP0 1018 aa12.7□□□□□ -0.38
CDH11-216ENST00000569128 FHAD1B1AJZ9 1412 aa12.7□□□□□ -0.38
CDH11-216ENST00000569128 ADAMTS12P58397 1594 aa12.69□□□□□ -0.38
CDH11-216ENST00000569128 CUL7Q14999 1698 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms