RNA–Protein interactions for RNA: ENST00000569128.1

CDH11-216, Transcript of cadherin 11, humanhuman

TSL 3

Gene CDH11, Length 781 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11-216ENST00000569128 AEBP2Q6ZN18 517 aaPredicted RBP29.75■■■□□ 2.35
CDH11-216ENST00000569128 CHIC1Q5VXU3 224 aa29.46■■■□□ 2.31
CDH11-216ENST00000569128 PHF23Q9BUL5 403 aaPredicted RBP25.98■■□□□ 1.75
CDH11-216ENST00000569128 SENP3Q9H4L4 574 aaPredicted RBP25.12■■□□□ 1.61
CDH11-216ENST00000569128 PLPPR3Q6T4P5 718 aa24.11■■□□□ 1.45
CDH11-216ENST00000569128 FOXD1Q16676 465 aa23.3■■□□□ 1.32
CDH11-216ENST00000569128 ADRA2BP18089 450 aa22.82■■□□□ 1.24
CDH11-216ENST00000569128 PPP6R1Q9UPN7 881 aa22.8■■□□□ 1.24
CDH11-216ENST00000569128 PIAS4Q8N2W9 510 aaPredicted RBP22.09■■□□□ 1.13
CDH11-216ENST00000569128 KCNA4P22459 653 aa21.37■■□□□ 1.01
CDH11-216ENST00000569128 PPP4R3CPQ6ZMV5 832 aa21.33■■□□□ 1.01
CDH11-216ENST00000569128 MSH5O43196 834 aa21.25■□□□□ 0.99
CDH11-216ENST00000569128 NCBP3Q53F19 620 aaKnown RBP20.87■□□□□ 0.93
CDH11-216ENST00000569128 SCAF1Q9H7N4 1312 aaKnown RBP20.8■□□□□ 0.92
CDH11-216ENST00000569128 NPM3O75607 178 aaKnown RBP20.6■□□□□ 0.89
CDH11-216ENST00000569128 CNKSR2Q8WXI2 1034 aa20.6■□□□□ 0.89
CDH11-216ENST00000569128 MAPK8IP2Q13387 824 aaPredicted RBP20.58■□□□□ 0.89
CDH11-216ENST00000569128 SLC4A1APQ9BWU0 796 aaKnown RBP20.42■□□□□ 0.86
CDH11-216ENST00000569128 EHMT2Q96KQ7 1210 aa20.41■□□□□ 0.86
CDH11-216ENST00000569128 DMRT2Q9Y5R5 561 aa20.13■□□□□ 0.81
CDH11-216ENST00000569128 RNF216Q9NWF9 866 aaPredicted RBP20.08■□□□□ 0.81
CDH11-216ENST00000569128 CSRNP3Q8WYN3 585 aa19.93■□□□□ 0.78
CDH11-216ENST00000569128 HOXD11P31277 338 aaPredicted RBP19.88■□□□□ 0.77
CDH11-216ENST00000569128 DNAJC5BQ9UF47 199 aa19.83■□□□□ 0.77
CDH11-216ENST00000569128 ZBTB22O15209 634 aa19.69■□□□□ 0.74
CDH11-216ENST00000569128 FOXD4L1Q9NU39 408 aa19.5■□□□□ 0.71
CDH11-216ENST00000569128 SLC4A2P04920 1241 aa19.35■□□□□ 0.69
CDH11-216ENST00000569128 DCAF8L1A6NGE4 600 aa19.31■□□□□ 0.68
CDH11-216ENST00000569128 POTEDQ86YR6 584 aa19.27■□□□□ 0.68
CDH11-216ENST00000569128 MYCNP04198 464 aaPredicted RBP19■□□□□ 0.63
CDH11-216ENST00000569128 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.99■□□□□ 0.63
CDH11-216ENST00000569128 ATXN8OSP0DMR3 200 aa18.75■□□□□ 0.59
CDH11-216ENST00000569128 U3KPZ7 1027 aaPredicted RBP18.73■□□□□ 0.59
CDH11-216ENST00000569128 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.59■□□□□ 0.57
CDH11-216ENST00000569128 HNRNPUL2Q1KMD3 747 aaKnown RBP18.59■□□□□ 0.57
CDH11-216ENST00000569128 SAMD1Q6SPF0 538 aaPredicted RBP18.56■□□□□ 0.56
CDH11-216ENST00000569128 ATF5Q9Y2D1 282 aaPredicted RBP18.52■□□□□ 0.56
CDH11-216ENST00000569128 APLP2Q06481 763 aa18.28■□□□□ 0.52
CDH11-216ENST00000569128 RNF39Q9H2S5 420 aa18.28■□□□□ 0.52
CDH11-216ENST00000569128 NISCHQ9Y2I1 1504 aa18.21■□□□□ 0.51
CDH11-216ENST00000569128 ZNF219Q9P2Y4 722 aaPredicted RBP18.15■□□□□ 0.5
CDH11-216ENST00000569128 SPINK5Q9NQ38 1064 aaPredicted RBP18.11■□□□□ 0.49
CDH11-216ENST00000569128 C1QBPQ07021 282 aaKnown RBP18.06■□□□□ 0.48
CDH11-216ENST00000569128 TRHP20396 242 aaPredicted RBP18.04■□□□□ 0.48
CDH11-216ENST00000569128 CAPN15O75808 1086 aa18■□□□□ 0.47
CDH11-216ENST00000569128 FKBP8Q14318 412 aa18■□□□□ 0.47
CDH11-216ENST00000569128 POLA2Q14181 598 aa17.82■□□□□ 0.44
CDH11-216ENST00000569128 ABCB7O75027 752 aa17.72■□□□□ 0.43
CDH11-216ENST00000569128 MKRN4PQ13434 485 aaPredicted RBP17.72■□□□□ 0.43
CDH11-216ENST00000569128 FBLN2P98095 1184 aa17.66■□□□□ 0.42
CDH11-216ENST00000569128 DSG3P32926 999 aa17.56■□□□□ 0.4
CDH11-216ENST00000569128 SPDYE4A6NLX3 237 aa17.52■□□□□ 0.4
CDH11-216ENST00000569128 CACNB1Q02641 598 aaPredicted RBP17.51■□□□□ 0.39
CDH11-216ENST00000569128 ZBTB12Q9Y330 459 aaPredicted RBP17.5■□□□□ 0.39
CDH11-216ENST00000569128 PROM2Q8N271 834 aa17.26■□□□□ 0.35
CDH11-216ENST00000569128 OSCARQ8IYS5 282 aa17.21■□□□□ 0.35
CDH11-216ENST00000569128 FBXO3Q9UK99 471 aa17.18■□□□□ 0.34
CDH11-216ENST00000569128 RTN4Q9NQC3 1192 aaKnown RBP17.17■□□□□ 0.34
CDH11-216ENST00000569128 AMER1Q5JTC6 1135 aaPredicted RBP17.15■□□□□ 0.34
CDH11-216ENST00000569128 ZNF692Q9BU19 519 aaPredicted RBP17.13■□□□□ 0.33
CDH11-216ENST00000569128 SPDYE2BA6NHP3 402 aa17.09■□□□□ 0.33
CDH11-216ENST00000569128 SPDYE6P0CI01 402 aa17.09■□□□□ 0.33
CDH11-216ENST00000569128 SPDYE2Q495Y8 402 aa17.09■□□□□ 0.33
CDH11-216ENST00000569128 SSUH2Q9Y2M2 353 aa17.01■□□□□ 0.31
CDH11-216ENST00000569128 VASPP50552 380 aaPredicted RBP16.97■□□□□ 0.31
CDH11-216ENST00000569128 PABPN1Q86U42 306 aaKnown RBP eCLIP16.93■□□□□ 0.3
CDH11-216ENST00000569128 SLC24A1O60721 1099 aa16.92■□□□□ 0.3
CDH11-216ENST00000569128 IFNLR1Q8IU57 520 aaPredicted RBP16.78■□□□□ 0.28
CDH11-216ENST00000569128 STAG3Q9UJ98 1225 aa16.74■□□□□ 0.27
CDH11-216ENST00000569128 RBM42Q9BTD8 480 aaKnown RBP16.69■□□□□ 0.26
CDH11-216ENST00000569128 PLCD3Q8N3E9 789 aa16.61■□□□□ 0.25
CDH11-216ENST00000569128 KLHL34Q8N239 644 aa16.6■□□□□ 0.25
CDH11-216ENST00000569128 AKT1S1Q96B36 256 aa16.59■□□□□ 0.25
CDH11-216ENST00000569128 MIER1Q8N108 512 aa16.58■□□□□ 0.24
CDH11-216ENST00000569128 SPOCK2Q92563 424 aa16.49■□□□□ 0.23
CDH11-216ENST00000569128 SPDYE1Q8NFV5 336 aaPredicted RBP16.48■□□□□ 0.23
CDH11-216ENST00000569128 REM2Q8IYK8 340 aaPredicted RBP16.47■□□□□ 0.23
CDH11-216ENST00000569128 CLEC11AQ9Y240 323 aa16.44■□□□□ 0.22
CDH11-216ENST00000569128 PLEKHG5O94827 1062 aa16.42■□□□□ 0.22
CDH11-216ENST00000569128 PKD2Q13563 968 aa16.39■□□□□ 0.21
CDH11-216ENST00000569128 ZBTB47Q9UFB7 747 aaPredicted RBP16.33■□□□□ 0.2
CDH11-216ENST00000569128 PRR29P0C7W0 189 aa16.32■□□□□ 0.2
CDH11-216ENST00000569128 PITPNM1O00562 1244 aa16.28■□□□□ 0.2
CDH11-216ENST00000569128 DCAF8L2P0C7V8 631 aa16.24■□□□□ 0.19
CDH11-216ENST00000569128 CREBZFQ9NS37 354 aa16.23■□□□□ 0.19
CDH11-216ENST00000569128 ECM2O94769 699 aaPredicted RBP16.21■□□□□ 0.19
CDH11-216ENST00000569128 CIZ1Q9ULV3 898 aaPredicted RBP16.19■□□□□ 0.18
CDH11-216ENST00000569128 MNX1P50219 401 aaPredicted RBP16.11■□□□□ 0.17
CDH11-216ENST00000569128 NUBP1P53384 320 aa16.1■□□□□ 0.17
CDH11-216ENST00000569128 RGL2O15211 777 aa16.05■□□□□ 0.16
CDH11-216ENST00000569128 GSE1Q14687 1217 aa16.01■□□□□ 0.15
CDH11-216ENST00000569128 DCAF8Q5TAQ9 597 aa16.01■□□□□ 0.15
CDH11-216ENST00000569128 CHADLQ6NUI6 762 aa16.01■□□□□ 0.15
CDH11-216ENST00000569128 TRIM41Q8WV44 630 aa15.97■□□□□ 0.15
CDH11-216ENST00000569128 CCDC180Q9P1Z9 1646 aa15.95■□□□□ 0.14
CDH11-216ENST00000569128 NPM1P06748 294 aaKnown RBP eCLIP15.95■□□□□ 0.14
CDH11-216ENST00000569128 RASEFQ8IZ41 740 aa15.95■□□□□ 0.14
CDH11-216ENST00000569128 FAM212AQ96EL1 285 aa15.95■□□□□ 0.14
CDH11-216ENST00000569128 PRKAR2AP13861 404 aaKnown RBP15.88■□□□□ 0.13
CDH11-216ENST00000569128 PLCB2Q00722 1185 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms