RNA–Protein interactions for RNA: ENST00000398868.7

ATL3-201, Transcript of atlastin GTPase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ATL3, Length 7,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-201ENST00000398868 MAP7D2Q96T17 732 aa11.38□□□□□ -0.59
ATL3-201ENST00000398868 BAZ1AQ9NRL2 1556 aaPredicted RBP11.37□□□□□ -0.59
ATL3-201ENST00000398868 DIAPH1O60610 1272 aaKnown RBP11.37□□□□□ -0.59
ATL3-201ENST00000398868 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.37□□□□□ -0.592e-27■■■■■ 408.4
ATL3-201ENST00000398868 BECN2A8MW95 431 aa11.37□□□□□ -0.59
ATL3-201ENST00000398868 TOM1L2Q6ZVM7 507 aa11.37□□□□□ -0.59
ATL3-201ENST00000398868 CGNL1Q0VF96 1302 aa11.37□□□□□ -0.59
ATL3-201ENST00000398868 VGFO15240 615 aaPredicted RBP11.37□□□□□ -0.59
ATL3-201ENST00000398868 CSPP1Q1MSJ5 1256 aa11.37□□□□□ -0.59
ATL3-201ENST00000398868 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.37□□□□□ -0.59
ATL3-201ENST00000398868 GPS2Q13227 327 aa11.37□□□□□ -0.59
ATL3-201ENST00000398868 G3BP1Q13283 466 aaKnown RBP eCLIP11.37□□□□□ -0.59
ATL3-201ENST00000398868 CPLX1O14810 134 aa11.36□□□□□ -0.59
ATL3-201ENST00000398868 TRIM29Q14134 588 aa11.36□□□□□ -0.59
ATL3-201ENST00000398868 VPS37CA5D8V6 355 aaPredicted RBP11.36□□□□□ -0.59
ATL3-201ENST00000398868 HSP90AB3PQ58FF7 597 aa11.36□□□□□ -0.59
ATL3-201ENST00000398868 NAP1L1P55209 391 aaKnown RBP11.35□□□□□ -0.59
ATL3-201ENST00000398868 PAF1Q8N7H5 531 aa11.35□□□□□ -0.59
ATL3-201ENST00000398868 PTPRGP23470 1445 aa11.35□□□□□ -0.59
ATL3-201ENST00000398868 ST18O60284 1047 aa11.35□□□□□ -0.59
ATL3-201ENST00000398868 LNPKQ9C0E8 428 aa11.35□□□□□ -0.59
ATL3-201ENST00000398868 AFAP1Q8N556 730 aa11.35□□□□□ -0.59
ATL3-201ENST00000398868 IFT57Q9NWB7 429 aa11.35□□□□□ -0.59
ATL3-201ENST00000398868 ZC3H6P61129 1189 aaKnown RBP11.35□□□□□ -0.59
ATL3-201ENST00000398868 MPNDQ8N594 471 aa11.35□□□□□ -0.59
ATL3-201ENST00000398868 ERICH2A1L162 156 aa11.34□□□□□ -0.59
ATL3-201ENST00000398868 CEBPZQ03701 1054 aaKnown RBP11.34□□□□□ -0.59
ATL3-201ENST00000398868 WDR70Q9NW82 654 aa11.34□□□□□ -0.59
ATL3-201ENST00000398868 TSR1Q2NL82 804 aaKnown RBP11.33□□□□□ -0.6
ATL3-201ENST00000398868 SLC4A8Q2Y0W8 1093 aa11.33□□□□□ -0.6
ATL3-201ENST00000398868 TRDNQ13061 729 aa11.33□□□□□ -0.6
ATL3-201ENST00000398868 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.33□□□□□ -0.6
ATL3-201ENST00000398868 PANK1Q8TE04 598 aa11.33□□□□□ -0.6
ATL3-201ENST00000398868 CFAP44Q96MT7 982 aa11.33□□□□□ -0.6
ATL3-201ENST00000398868 C11orf95C9JLR9 678 aaPredicted RBP11.32□□□□□ -0.6
ATL3-201ENST00000398868 RUSC2Q8N2Y8 1516 aa11.32□□□□□ -0.6
ATL3-201ENST00000398868 RNF214Q8ND24 703 aa11.32□□□□□ -0.6
ATL3-201ENST00000398868 NOM1Q5C9Z4 860 aaKnown RBP11.31□□□□□ -0.6
ATL3-201ENST00000398868 BICD2Q8TD16 824 aa11.31□□□□□ -0.6
ATL3-201ENST00000398868 CNNM1Q9NRU3 951 aa11.31□□□□□ -0.6
ATL3-201ENST00000398868 DDX58O95786 925 aaKnown RBP11.31□□□□□ -0.6
ATL3-201ENST00000398868 ZSCAN29Q8IWY8 852 aaPredicted RBP11.31□□□□□ -0.6
ATL3-201ENST00000398868 PRDM10Q9NQV6 1147 aa11.31□□□□□ -0.6
ATL3-201ENST00000398868 CCDC34Q96HJ3 373 aa11.31□□□□□ -0.6
ATL3-201ENST00000398868 H0YHG0 523 aa11.31□□□□□ -0.6
ATL3-201ENST00000398868 KIF6Q6ZMV9 814 aa11.31□□□□□ -0.6
ATL3-201ENST00000398868 TRMT1LQ7Z2T5 733 aaKnown RBP11.31□□□□□ -0.6
ATL3-201ENST00000398868 RAPGEF2Q9Y4G8 1499 aa11.31□□□□□ -0.6
ATL3-201ENST00000398868 ZKSCAN2Q63HK3 967 aa11.3□□□□□ -0.6
ATL3-201ENST00000398868 CCDC70Q6NSX1 233 aa11.3□□□□□ -0.6
ATL3-201ENST00000398868 NLRP13Q86W25 1043 aa11.3□□□□□ -0.6
ATL3-201ENST00000398868 MIS18AQ9NYP9 233 aa11.3□□□□□ -0.6
ATL3-201ENST00000398868 NFKBIBQ15653 356 aa11.3□□□□□ -0.6
ATL3-201ENST00000398868 RAPGEF3O95398 923 aa11.3□□□□□ -0.6
ATL3-201ENST00000398868 CCDC18Q5T9S5 1454 aa11.3□□□□□ -0.6
ATL3-201ENST00000398868 RBM25P49756 843 aaKnown RBP11.3□□□□□ -0.6
ATL3-201ENST00000398868 STK3Q13188 491 aa11.3□□□□□ -0.6
ATL3-201ENST00000398868 RRS1Q15050 365 aaKnown RBP11.3□□□□□ -0.6
ATL3-201ENST00000398868 PRAM1Q96QH2 718 aa11.3□□□□□ -0.6
ATL3-201ENST00000398868 FMN1Q68DA7 1419 aa11.29□□□□□ -0.6
ATL3-201ENST00000398868 ZHX3Q9H4I2 956 aa11.29□□□□□ -0.6
ATL3-201ENST00000398868 RAD54L2Q9Y4B4 1467 aa11.29□□□□□ -0.6
ATL3-201ENST00000398868 AEBP1Q8IUX7 1158 aa11.29□□□□□ -0.6
ATL3-201ENST00000398868 RUFY1Q96T51 708 aa11.29□□□□□ -0.6
ATL3-201ENST00000398868 BRPF1P55201 1214 aaPredicted RBP11.28□□□□□ -0.6
ATL3-201ENST00000398868 ERICH4A6NGS2 130 aa11.28□□□□□ -0.6
ATL3-201ENST00000398868 CABP4P57796 275 aa11.28□□□□□ -0.6
ATL3-201ENST00000398868 CT47A1Q5JQC4 288 aaPredicted RBP11.28□□□□□ -0.6
ATL3-201ENST00000398868 AQRO60306 1485 aaKnown RBP eCLIP11.28□□□□□ -0.62e-6■■■■■ 28.3
ATL3-201ENST00000398868 HDAC5Q9UQL6 1122 aa11.28□□□□□ -0.6
ATL3-201ENST00000398868 USHBP1Q8N6Y0 703 aa11.28□□□□□ -0.6
ATL3-201ENST00000398868 TPM2P07951 284 aa11.28□□□□□ -0.6
ATL3-201ENST00000398868 VPS8Q8N3P4 1428 aa11.28□□□□□ -0.6
ATL3-201ENST00000398868 PDE3BQ13370 1112 aa11.28□□□□□ -0.6
ATL3-201ENST00000398868 SKOR2Q2VWA4 1001 aaPredicted RBP11.28□□□□□ -0.6
ATL3-201ENST00000398868 RDXP35241 583 aaKnown RBP11.27□□□□□ -0.6
ATL3-201ENST00000398868 MNS1Q8NEH6 495 aa11.27□□□□□ -0.6
ATL3-201ENST00000398868 PTCD1O75127 700 aaKnown RBP11.27□□□□□ -0.61
ATL3-201ENST00000398868 CFAP70Q5T0N1 1121 aa11.26□□□□□ -0.61
ATL3-201ENST00000398868 PPM1FP49593 454 aaPredicted RBP11.26□□□□□ -0.61
ATL3-201ENST00000398868 USP47Q96K76 1375 aa11.26□□□□□ -0.61
ATL3-201ENST00000398868 MYBBP1AQ9BQG0 1328 aaKnown RBP11.26□□□□□ -0.61
ATL3-201ENST00000398868 EPS15P42566 896 aa11.26□□□□□ -0.61
ATL3-201ENST00000398868 ODF2Q5BJF6 829 aa11.26□□□□□ -0.61
ATL3-201ENST00000398868 PDILTQ8N807 584 aa11.26□□□□□ -0.61
ATL3-201ENST00000398868 TPM1P09493 284 aa11.26□□□□□ -0.61
ATL3-201ENST00000398868 TSR2Q969E8 191 aaKnown RBP11.26□□□□□ -0.61
ATL3-201ENST00000398868 MPHOSPH10O00566 681 aaKnown RBP11.26□□□□□ -0.61
ATL3-201ENST00000398868 RALYLQ86SE5 291 aaKnown RBP11.25□□□□□ -0.61
ATL3-201ENST00000398868 SPC24Q8NBT2 197 aa11.25□□□□□ -0.61
ATL3-201ENST00000398868 NASPP49321 788 aaPredicted RBP11.25□□□□□ -0.61
ATL3-201ENST00000398868 TTLL12Q14166 644 aaPredicted RBP11.25□□□□□ -0.61
ATL3-201ENST00000398868 KIF15Q9NS87 1388 aa11.25□□□□□ -0.61
ATL3-201ENST00000398868 UBTFL1P0CB47 393 aaPredicted RBP11.25□□□□□ -0.61
ATL3-201ENST00000398868 FSD1Q9BTV5 496 aa11.25□□□□□ -0.61
ATL3-201ENST00000398868 MTHFSP49914 203 aa11.25□□□□□ -0.61
ATL3-201ENST00000398868 FKBP4Q02790 459 aaKnown RBP eCLIP11.25□□□□□ -0.61
ATL3-201ENST00000398868 TTC39AQ5SRH9 613 aa11.25□□□□□ -0.61
ATL3-201ENST00000398868 AK7Q96M32 723 aa11.25□□□□□ -0.61
ATL3-201ENST00000398868 FANCIQ9NVI1 1328 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms