RNA–Protein interactions for RNA: YPR013C

CMR3, Transcript of Putative zinc finger protein, yeast

Gene CMR3, Length 954 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CMR3	YPR013C	NUP159	P40477	1460 aa		1.25	□□□□□ -2.21
CMR3	YPR013C	TIM12	P32830	109 aa		1.25	□□□□□ -2.21
CMR3	YPR013C	YIL134C-A	Q45U18	67 aa		1.25	□□□□□ -2.21
CMR3	YPR013C	YGR035W-A	Q45U48	73 aa		1.25	□□□□□ -2.21
CMR3	YPR013C	PAI3	P01094	68 aa		1.23	□□□□□ -2.21
CMR3	YPR013C	EDC1	P53080	175 aa	Predicted RBP	1.23	□□□□□ -2.21
CMR3	YPR013C	ATX1	P38636	73 aa		1.22	□□□□□ -2.21
CMR3	YPR013C	ATP17	Q06405	101 aa		1.21	□□□□□ -2.22
CMR3	YPR013C	DOP1	Q03921	1698 aa		1.2	□□□□□ -2.22
CMR3	YPR013C	UFD4	P33202	1483 aa		1.18	□□□□□ -2.22
CMR3	YPR013C	PAU7	P39545	55 aa		1.18	□□□□□ -2.22
CMR3	YPR013C	APC1	P53886	1748 aa		1.17	□□□□□ -2.22
CMR3	YPR013C	YFL041W-A	Q3E817	63 aa		1.16	□□□□□ -2.22
CMR3	YPR013C	TY2B-LR1	P0C2J3	1770 aa		1.16	□□□□□ -2.22
CMR3	YPR013C	TY2B-F	P0CX63	1770 aa		1.16	□□□□□ -2.22
CMR3	YPR013C	TY2B-GR2	P0CX64	1770 aa		1.16	□□□□□ -2.22
CMR3	YPR013C	PMD1	P32634	1753 aa		1.16	□□□□□ -2.22
CMR3	YPR013C	TY2B-DR2	Q03494	1770 aa		1.16	□□□□□ -2.22
CMR3	YPR013C	TY2B-OR1	Q12113	1770 aa		1.16	□□□□□ -2.22
CMR3	YPR013C	TY2B-B	Q12491	1770 aa		1.16	□□□□□ -2.22
CMR3	YPR013C	TY2B-OR2	Q12501	1770 aa		1.16	□□□□□ -2.22
CMR3	YPR013C	YKL018C-A	Q3E7A7	99 aa		1.15	□□□□□ -2.23
CMR3	YPR013C	YOR032W-A	Q8TGS1	66 aa		1.15	□□□□□ -2.23
CMR3	YPR013C	TAO3	P40468	2376 aa		1.14	□□□□□ -2.23
CMR3	YPR013C	TY2B-DR3	Q07791	1770 aa	Known RBP	1.13	□□□□□ -2.23
CMR3	YPR013C	SSS1	P35179	80 aa		1.12	□□□□□ -2.23
CMR3	YPR013C	SPI1	P40092	148 aa		1.12	□□□□□ -2.23
CMR3	YPR013C	ERI1	P62651	68 aa	Known RBP	1.1	□□□□□ -2.23
CMR3	YPR013C	YLR146W-A	Q2V2P1	62 aa		1.1	□□□□□ -2.23
CMR3	YPR013C	YGR025W	P53216	100 aa		1.09	□□□□□ -2.23
CMR3	YPR013C	SEN1	Q00416	2231 aa	Known RBP	1.07	□□□□□ -2.24
CMR3	YPR013C	SCC2	Q04002	1493 aa		1.06	□□□□□ -2.24
CMR3	YPR013C	TCB3	Q03640	1545 aa	Known RBP	1.06	□□□□□ -2.24
CMR3	YPR013C	SMC4	Q12267	1418 aa		1.05	□□□□□ -2.24
CMR3	YPR013C	IML1	P47170	1584 aa		1.04	□□□□□ -2.24
CMR3	YPR013C	HUB1	Q6Q546	73 aa		1.03	□□□□□ -2.24
CMR3	YPR013C	YBL044W	P38194	122 aa		1.02	□□□□□ -2.25
CMR3	YPR013C	YBR200W-A	Q3E755	54 aa		1.02	□□□□□ -2.25
CMR3	YPR013C	TY1B-DR4	Q07793	1604 aa		1	□□□□□ -2.25
CMR3	YPR013C	YBL039W-B	P0C268	59 aa		0.99	□□□□□ -2.25
CMR3	YPR013C	YDR246W-A	Q3E763	66 aa		0.99	□□□□□ -2.25
CMR3	YPR013C	YOR011W-A	Q3E807	68 aa		0.99	□□□□□ -2.25
CMR3	YPR013C	MON2	P48563	1636 aa	Predicted RBP	0.99	□□□□□ -2.25
CMR3	YPR013C	ARO1	P08566	1588 aa	Known RBP	0.99	□□□□□ -2.25
CMR3	YPR013C	RPS27A	P35997	82 aa	Known RBP	0.98	□□□□□ -2.25
CMR3	YPR013C	YSY6	P38374	65 aa		0.98	□□□□□ -2.25
CMR3	YPR013C	OLI1	P61829	76 aa		0.98	□□□□□ -2.25
CMR3	YPR013C	DNF1	P32660	1571 aa		0.98	□□□□□ -2.25
CMR3	YPR013C	THO2	P53552	1597 aa	Known RBP	0.98	□□□□□ -2.25
CMR3	YPR013C	SSK2	P53599	1579 aa		0.98	□□□□□ -2.25
CMR3	YPR013C	VPS15	P22219	1454 aa		0.98	□□□□□ -2.25
CMR3	YPR013C	DNF2	Q12675	1612 aa		0.97	□□□□□ -2.25
CMR3	YPR013C	MLP2	P40457	1679 aa		0.97	□□□□□ -2.25
CMR3	YPR013C	NUP170	P38181	1502 aa		0.96	□□□□□ -2.26
CMR3	YPR013C	YOR394C-A	Q8TGJ0	55 aa		0.96	□□□□□ -2.26
CMR3	YPR013C	MMS1	Q06211	1407 aa		0.96	□□□□□ -2.26
CMR3	YPR013C	HIR3	P47171	1648 aa		0.96	□□□□□ -2.26
CMR3	YPR013C	KOG1	P38873	1557 aa		0.96	□□□□□ -2.26
CMR3	YPR013C	RPO31	P04051	1460 aa		0.95	□□□□□ -2.26
CMR3	YPR013C	IQG1	Q12280	1495 aa		0.95	□□□□□ -2.26
CMR3	YPR013C	YDR182W-A	Q3E796	67 aa		0.95	□□□□□ -2.26
CMR3	YPR013C	PEP1	P32319	1579 aa		0.95	□□□□□ -2.26
CMR3	YPR013C	STU1	P38198	1513 aa		0.94	□□□□□ -2.26
CMR3	YPR013C	YCF1	P39109	1515 aa	Known RBP	0.94	□□□□□ -2.26
CMR3	YPR013C	SPT6	P23615	1451 aa	Known RBP	0.94	□□□□□ -2.26
CMR3	YPR013C	ULS1	Q08562	1619 aa		0.94	□□□□□ -2.26
CMR3	YPR013C	IRC20	Q06554	1556 aa		0.94	□□□□□ -2.26
CMR3	YPR013C	MYO4	P32492	1471 aa		0.93	□□□□□ -2.26
CMR3	YPR013C	ATG2	P53855	1592 aa		0.93	□□□□□ -2.26
CMR3	YPR013C	YIL102C-A	Q2V2P5	75 aa		0.93	□□□□□ -2.26
CMR3	YPR013C	YCR108C	Q3E819	63 aa		0.93	□□□□□ -2.26
CMR3	YPR013C	GCN2	P15442	1659 aa		0.93	□□□□□ -2.26
CMR3	YPR013C	YBT1	P32386	1661 aa		0.93	□□□□□ -2.26
CMR3	YPR013C	TY3B-G	Q99315	1547 aa		0.93	□□□□□ -2.26
CMR3	YPR013C	RKR1	Q04781	1562 aa		0.92	□□□□□ -2.26
CMR3	YPR013C	YOL131W	Q08270	108 aa		0.92	□□□□□ -2.26
CMR3	YPR013C	PDR15	Q04182	1529 aa	Known RBP	0.92	□□□□□ -2.26
CMR3	YPR013C	RRP5	Q05022	1729 aa	Known RBP	0.92	□□□□□ -2.26
CMR3	YPR013C	RPS30A	P0CX33	63 aa	Known RBP	0.91	□□□□□ -2.26
CMR3	YPR013C	RPS30B	P0CX34	63 aa	Known RBP	0.91	□□□□□ -2.26
CMR3	YPR013C	SNQ2	P32568	1501 aa	Known RBP	0.9	□□□□□ -2.26
CMR3	YPR013C	PDR5	P33302	1511 aa	Known RBP	0.89	□□□□□ -2.27
CMR3	YPR013C	FKS3	Q04952	1785 aa		0.89	□□□□□ -2.27
CMR3	YPR013C	RPO21	P04050	1733 aa	Known RBP	0.89	□□□□□ -2.27
CMR3	YPR013C	YOR093C	Q12275	1648 aa		0.89	□□□□□ -2.27
CMR3	YPR013C	CDC25	P04821	1589 aa		0.87	□□□□□ -2.27
CMR3	YPR013C	HAP1	P0CE41	1502 aa		0.87	□□□□□ -2.27
CMR3	YPR013C	VTH1	P40438	1549 aa		0.87	□□□□□ -2.27
CMR3	YPR013C	VTH2	P40890	1549 aa		0.87	□□□□□ -2.27
CMR3	YPR013C	PDR12	Q02785	1511 aa		0.87	□□□□□ -2.27
CMR3	YPR013C	CHC1	P22137	1653 aa	Known RBP	0.87	□□□□□ -2.27
CMR3	YPR013C	SPO14	P36126	1683 aa		0.87	□□□□□ -2.27
CMR3	YPR013C	VMR1	P38735	1592 aa		0.86	□□□□□ -2.27
CMR3	YPR013C	USO1	P25386	1790 aa		0.85	□□□□□ -2.27
CMR3	YPR013C	NUP192	P47054	1683 aa		0.85	□□□□□ -2.27
CMR3	YPR013C	NUP188	P52593	1655 aa	Known RBP	0.85	□□□□□ -2.27
CMR3	YPR013C	SIP18	P50263	79 aa		0.84	□□□□□ -2.27
CMR3	YPR013C	BUD3	P25558	1636 aa		0.84	□□□□□ -2.28
CMR3	YPR013C	YFR010W-A	P0C5N0	62 aa		0.83	□□□□□ -2.28
CMR3	YPR013C	VMA9	Q3E7B6	73 aa		0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 53.8 ms