RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 CDK2AP1O14519 115 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 RASGRF2O14827 1237 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 XPO1O14980 1071 aaKnown RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 IDH3BO43837 385 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 ZNF254O75437 659 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 SGPL1O95470 568 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 CBX6O95503 412 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 F12P00748 615 aaPredicted RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 HLA-DOAP06340 250 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 DBTP11182 482 aaKnown RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 CCDC130P13994 396 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 STMN1P16949 149 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 ITGAXP20702 1163 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 PTPN4P29074 926 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 ADORA1P30542 326 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 SERPINB1P30740 379 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 PGM1P36871 562 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 UBA7P41226 1012 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 CHN2P52757 468 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 SLC5A3P53794 718 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 DYNLL1P63167 89 aaKnown RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 PHC1P78364 1004 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 PTH1RQ03431 593 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 DNAJC3Q13217 504 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 COL9A3Q14050 684 aaPredicted RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 KCTD2Q14681 263 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 NR1I3Q14994 352 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 KRT31Q15323 416 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 TTF1Q15361 905 aaPredicted RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 SF3B4Q15427 424 aaKnown RBP eCLIP2.89□□□□□ -1.95
LIG4-203ENST00000442234 TRIP10Q15642 601 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 ITPRIPL1Q6GPH6 555 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 NIPAL1Q6NVV3 410 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 TMC7Q7Z402 723 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 USP37Q86T82 979 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 ITIH5Q86UX2 942 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 DDX42Q86XP3 938 aaKnown RBP eCLIP2.89□□□□□ -1.95
LIG4-203ENST00000442234 CERS5Q8N5B7 392 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 ENDOVQ8N8Q3 282 aaKnown RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 USP38Q8NB14 1042 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 SLC44A5Q8NCS7 719 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 NKX2-3Q8TAU0 364 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 ANKS1AQ92625 1134 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 TAMM41Q96BW9 452 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 EFHD2Q96C19 240 aaPredicted RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 EDC3Q96F86 508 aaKnown RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 CFAP57Q96MR6 1250 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 CIB1Q99828 191 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 ZNF717Q9BY31 904 aaPredicted RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 LDHAL6BQ9BYZ2 381 aaPredicted RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 KIAA1683Q9H0B3 1180 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 MYLK2Q9H1R3 596 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 PORCNQ9H237 461 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 LRMDAQ9H2I8 198 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 TMEM60Q9H2L4 133 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 RAD21L1Q9H4I0 556 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 MLXIPQ9HAP2 919 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 SIAEQ9HAT2 523 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 FANCFQ9NPI8 374 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 PI4KBQ9UBF8 816 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 FBXO2Q9UK22 296 aaPredicted RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 APPL1Q9UKG1 709 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 HECTD1Q9ULT8 2610 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 TMEM5Q9Y2B1 443 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 WDFY4Q6ZS81 3184 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 CYP2D7A0A087X1C5 515 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 GSTTP1A0A1W2PQM5 241 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 RAD51CO43502 376 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 NMT2O60551 498 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 TLR2O60603 784 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 HNRNPCL1O60812 293 aaKnown RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 TBX10O75333 385 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 VAMP4O75379 141 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 RNASEH2AO75792 299 aaKnown RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 ZWINTO95229 277 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 WEE2P0C1S8 567 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 PRLRP16471 622 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 RASA1P20936 1047 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 TNFRSF8P28908 595 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 HNF1BP35680 557 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 SOX5P35711 763 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 PRCPP42785 496 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 PHKA1P46020 1223 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 POLD2P49005 469 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 COPB1P53618 953 aaKnown RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 SNX16P57768 344 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 PPP2R2BQ00005 443 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 IL9RQ01113 521 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 CAP1Q01518 475 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 LMNB2Q03252 620 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 OCA2Q04671 838 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 NFX1Q12986 1120 aaKnown RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 PDK3Q15120 406 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 KLHL38Q2WGJ6 581 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 MTERF2Q49AM1 385 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 CERKLQ49MI3 558 aaPredicted RBP2.89□□□□□ -1.95
LIG4-203ENST00000442234 NADK2Q4G0N4 442 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 CLVS2Q5SYC1 327 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 SLC9C2Q5TAH2 1124 aa2.89□□□□□ -1.95
LIG4-203ENST00000442234 RRAGBQ5VZM2 374 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms