RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 AEBP2Q6ZN18 517 aaPredicted RBP7.37□□□□□ -1.23
LIG4-203ENST00000442234 CHIC1Q5VXU3 224 aa7.3□□□□□ -1.24
LIG4-203ENST00000442234 SENP3Q9H4L4 574 aaPredicted RBP6.36□□□□□ -1.39
LIG4-203ENST00000442234 PHF23Q9BUL5 403 aaPredicted RBP6.33□□□□□ -1.4
LIG4-203ENST00000442234 PLPPR3Q6T4P5 718 aa5.89□□□□□ -1.47
LIG4-203ENST00000442234 FOXD1Q16676 465 aa5.82□□□□□ -1.48
LIG4-203ENST00000442234 MSH5O43196 834 aa5.51□□□□□ -1.53
LIG4-203ENST00000442234 PPP6R1Q9UPN7 881 aa5.49□□□□□ -1.53
LIG4-203ENST00000442234 ADRA2BP18089 450 aa5.47□□□□□ -1.53
LIG4-203ENST00000442234 PIAS4Q8N2W9 510 aaPredicted RBP5.41□□□□□ -1.54
LIG4-203ENST00000442234 DCAF8L2P0C7V8 631 aa5.39□□□□□ -1.55
LIG4-203ENST00000442234 SCAF1Q9H7N4 1312 aaKnown RBP5.19□□□□□ -1.58
LIG4-203ENST00000442234 DNAJC5BQ9UF47 199 aa5.16□□□□□ -1.58
LIG4-203ENST00000442234 PPP4R3CPQ6ZMV5 832 aa5.14□□□□□ -1.59
LIG4-203ENST00000442234 DMRT2Q9Y5R5 561 aa5.11□□□□□ -1.59
LIG4-203ENST00000442234 CNKSR2Q8WXI2 1034 aa5.08□□□□□ -1.6
LIG4-203ENST00000442234 NCBP3Q53F19 620 aaKnown RBP5.07□□□□□ -1.6
LIG4-203ENST00000442234 HOXD11P31277 338 aaPredicted RBP5.03□□□□□ -1.6
LIG4-203ENST00000442234 RNF216Q9NWF9 866 aaPredicted RBP5.02□□□□□ -1.61
LIG4-203ENST00000442234 ABCC9O60706 1549 aa4.99□□□□□ -1.61
LIG4-203ENST00000442234 PABPN1Q86U42 306 aaKnown RBP eCLIP4.94□□□□□ -1.62
LIG4-203ENST00000442234 MAPK8IP2Q13387 824 aaPredicted RBP4.94□□□□□ -1.62
LIG4-203ENST00000442234 POTEDQ86YR6 584 aa4.93□□□□□ -1.62
LIG4-203ENST00000442234 UNC13AQ9UPW8 1703 aa4.93□□□□□ -1.62
LIG4-203ENST00000442234 PELP1Q8IZL8 1130 aaKnown RBP4.92□□□□□ -1.62
LIG4-203ENST00000442234 NPM3O75607 178 aaKnown RBP4.91□□□□□ -1.62
LIG4-203ENST00000442234 KCNA4P22459 653 aa4.89□□□□□ -1.63
LIG4-203ENST00000442234 MYT1Q01538 1121 aa4.86□□□□□ -1.63
LIG4-203ENST00000442234 TRIM41Q8WV44 630 aa4.82□□□□□ -1.64
LIG4-203ENST00000442234 CCDC180Q9P1Z9 1646 aa4.79□□□□□ -1.64
LIG4-203ENST00000442234 NISCHQ9Y2I1 1504 aa4.78□□□□□ -1.64
LIG4-203ENST00000442234 SLC4A1APQ9BWU0 796 aaKnown RBP4.69□□□□□ -1.66
LIG4-203ENST00000442234 RNF39Q9H2S5 420 aa4.68□□□□□ -1.66
LIG4-203ENST00000442234 C1QBPQ07021 282 aaKnown RBP4.65□□□□□ -1.66
LIG4-203ENST00000442234 SLC4A2P04920 1241 aa4.65□□□□□ -1.66
LIG4-203ENST00000442234 ATXN8OSP0DMR3 200 aa4.64□□□□□ -1.67
LIG4-203ENST00000442234 APLP2Q06481 763 aa4.64□□□□□ -1.67
LIG4-203ENST00000442234 EHMT2Q96KQ7 1210 aa4.63□□□□□ -1.67
LIG4-203ENST00000442234 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.63□□□□□ -1.67
LIG4-203ENST00000442234 HNRNPUL2Q1KMD3 747 aaKnown RBP4.63□□□□□ -1.67
LIG4-203ENST00000442234 FOXD4L1Q9NU39 408 aa4.63□□□□□ -1.67
LIG4-203ENST00000442234 SHROOM4Q9ULL8 1493 aa4.62□□□□□ -1.67
LIG4-203ENST00000442234 TTBK1Q5TCY1 1321 aaPredicted RBP4.62□□□□□ -1.67
LIG4-203ENST00000442234 MYCNP04198 464 aaPredicted RBP4.61□□□□□ -1.67
LIG4-203ENST00000442234 TRHP20396 242 aaPredicted RBP4.61□□□□□ -1.67
LIG4-203ENST00000442234 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.58□□□□□ -1.68
LIG4-203ENST00000442234 U3KPZ7 1027 aaPredicted RBP4.58□□□□□ -1.68
LIG4-203ENST00000442234 SAMD1Q6SPF0 538 aaPredicted RBP4.57□□□□□ -1.68
LIG4-203ENST00000442234 BICRAQ9NZM4 1560 aa4.56□□□□□ -1.68
LIG4-203ENST00000442234 FBLN2P98095 1184 aa4.55□□□□□ -1.68
LIG4-203ENST00000442234 DCAF8L1A6NGE4 600 aa4.54□□□□□ -1.68
LIG4-203ENST00000442234 ZBTB22O15209 634 aa4.52□□□□□ -1.69
LIG4-203ENST00000442234 HRCP23327 699 aa4.5□□□□□ -1.69
LIG4-203ENST00000442234 ERICH6Q7L0X2 663 aa4.49□□□□□ -1.69
LIG4-203ENST00000442234 CSRNP3Q8WYN3 585 aa4.49□□□□□ -1.69
LIG4-203ENST00000442234 PRKCSHP14314 528 aaPredicted RBP4.48□□□□□ -1.69
LIG4-203ENST00000442234 ZNF219Q9P2Y4 722 aaPredicted RBP4.46□□□□□ -1.69
LIG4-203ENST00000442234 BCL11AQ9H165 835 aa4.43□□□□□ -1.7
LIG4-203ENST00000442234 DNAJC5Q9H3Z4 198 aa4.43□□□□□ -1.7
LIG4-203ENST00000442234 RANGAP1P46060 587 aaPredicted RBP4.42□□□□□ -1.7
LIG4-203ENST00000442234 CACNB1Q02641 598 aaPredicted RBP4.42□□□□□ -1.7
LIG4-203ENST00000442234 CYB5RLQ6IPT4 315 aa4.41□□□□□ -1.7
LIG4-203ENST00000442234 PPARGC1BQ86YN6 1023 aaKnown RBP4.41□□□□□ -1.7
LIG4-203ENST00000442234 ZBTB12Q9Y330 459 aaPredicted RBP4.4□□□□□ -1.7
LIG4-203ENST00000442234 DSG3P32926 999 aa4.39□□□□□ -1.71
LIG4-203ENST00000442234 MYO15BQ96JP2 1530 aa4.39□□□□□ -1.71
LIG4-203ENST00000442234 CENPBP07199 599 aaPredicted RBP4.39□□□□□ -1.71
LIG4-203ENST00000442234 ERCC6Q03468 1493 aa4.37□□□□□ -1.71
LIG4-203ENST00000442234 SUPT5HO00267 1087 aaKnown RBP4.37□□□□□ -1.71
LIG4-203ENST00000442234 SLC24A1O60721 1099 aa4.36□□□□□ -1.71
LIG4-203ENST00000442234 PCGF6Q9BYE7 350 aa4.35□□□□□ -1.71
LIG4-203ENST00000442234 SPINK5Q9NQ38 1064 aaPredicted RBP4.35□□□□□ -1.71
LIG4-203ENST00000442234 ATF5Q9Y2D1 282 aaPredicted RBP4.35□□□□□ -1.71
LIG4-203ENST00000442234 CECR2Q9BXF3 1484 aa4.34□□□□□ -1.71
LIG4-203ENST00000442234 ARID3CA6NKF2 412 aa4.33□□□□□ -1.72
LIG4-203ENST00000442234 FAM9AQ8IZU1 332 aaPredicted RBP4.33□□□□□ -1.72
LIG4-203ENST00000442234 CAPN15O75808 1086 aa4.32□□□□□ -1.72
LIG4-203ENST00000442234 MYT1LQ9UL68 1186 aa4.29□□□□□ -1.72
LIG4-203ENST00000442234 GTF3C3Q9Y5Q9 886 aa4.29□□□□□ -1.72
LIG4-203ENST00000442234 THOC2Q8NI27 1593 aaKnown RBP4.28□□□□□ -1.72
LIG4-203ENST00000442234 ATP1B4Q9UN42 357 aaPredicted RBP4.28□□□□□ -1.72
LIG4-203ENST00000442234 ACIN1Q9UKV3 1341 aaKnown RBP4.26□□□□□ -1.73
LIG4-203ENST00000442234 SCRIBQ14160 1630 aa4.25□□□□□ -1.73
LIG4-203ENST00000442234 POLA2Q14181 598 aa4.25□□□□□ -1.73
LIG4-203ENST00000442234 PROM2Q8N271 834 aa4.24□□□□□ -1.73
LIG4-203ENST00000442234 RBM42Q9BTD8 480 aaKnown RBP4.23□□□□□ -1.73
LIG4-203ENST00000442234 OSCARQ8IYS5 282 aa4.23□□□□□ -1.73
LIG4-203ENST00000442234 RTN4Q9NQC3 1192 aaKnown RBP4.22□□□□□ -1.73
LIG4-203ENST00000442234 EIF5BO60841 1220 aaKnown RBP4.22□□□□□ -1.73
LIG4-203ENST00000442234 MKRN4PQ13434 485 aaPredicted RBP4.22□□□□□ -1.73
LIG4-203ENST00000442234 PRDM2Q13029 1718 aa4.22□□□□□ -1.73
LIG4-203ENST00000442234 ZEB1P37275 1124 aaPredicted RBP4.22□□□□□ -1.73
LIG4-203ENST00000442234 SPDYE2BA6NHP3 402 aa4.21□□□□□ -1.73
LIG4-203ENST00000442234 SPDYE6P0CI01 402 aa4.21□□□□□ -1.73
LIG4-203ENST00000442234 SPDYE2Q495Y8 402 aa4.21□□□□□ -1.73
LIG4-203ENST00000442234 ANP32EQ9BTT0 268 aa4.21□□□□□ -1.73
LIG4-203ENST00000442234 NEUROD1Q13562 356 aa4.21□□□□□ -1.74
LIG4-203ENST00000442234 SSUH2Q9Y2M2 353 aa4.21□□□□□ -1.74
LIG4-203ENST00000442234 AKT1S1Q96B36 256 aa4.21□□□□□ -1.74
LIG4-203ENST00000442234 CHMP7Q8WUX9 453 aaPredicted RBP4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms