RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 ANPEPP15144 967 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 ALDH1A3P47895 512 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 USP46P62068 366 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 PSMC6P62333 389 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 CDK16Q00536 496 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 BFSP2Q13515 415 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 GTF2H3Q13889 308 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 ZFP1Q6P2D0 407 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 KAT2BQ92831 832 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 RERGLQ9H628 205 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 ARHGEF40Q8TER5 1519 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 ALKQ9UM73 1620 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 UBA6A0AVT1 1052 aaPredicted RBP10.81□□□□□ -0.68
VCL-201ENST00000211998 DPYSL4O14531 572 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 BNIP3LO60238 219 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 EFCAB14O75071 495 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 GLRA3O75311 464 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 CHRNB3Q05901 458 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 PDIA5Q14554 519 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 KLHL12Q53G59 568 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 RDM1Q8NG50 284 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 EIF2AK1Q9BQI3 630 aaKnown RBP10.81□□□□□ -0.68
VCL-201ENST00000211998 MMTAG2Q9BU76 263 aaKnown RBP10.81□□□□□ -0.68
VCL-201ENST00000211998 TRNAU1APQ9NX07 287 aaKnown RBP10.81□□□□□ -0.68
VCL-201ENST00000211998 IMPAD1Q9NX62 359 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 PAK5Q9P286 719 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 E5RI56 91 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 HSMCR30P0CW71 290 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 SP100P23497 879 aaPredicted RBP10.81□□□□□ -0.68
VCL-201ENST00000211998 SERPINH1P50454 418 aaKnown RBP10.81□□□□□ -0.68
VCL-201ENST00000211998 MMRN1Q13201 1228 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 RNF43Q68DV7 783 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 GJB7Q6PEY0 223 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 NET1Q7Z628 596 aaPredicted RBP10.81□□□□□ -0.68
VCL-201ENST00000211998 PDCD6IPQ8WUM4 868 aaKnown RBP10.81□□□□□ -0.68
VCL-201ENST00000211998 AGAP3Q96P47 875 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 VPS33BQ9H267 617 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 CHKBQ9Y259 395 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 CARD8Q9Y2G2 431 aa10.81□□□□□ -0.68
VCL-201ENST00000211998 KANSL1LA0AUZ9 987 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 ATP6V1B2P21281 511 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 FASP25445 335 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 NMT1P30419 496 aaKnown RBP10.8□□□□□ -0.68
VCL-201ENST00000211998 TRAF3Q13114 568 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 ARHGEF19Q8IW93 802 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 FAM71DQ8N9W8 422 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 ENKURQ8TC29 256 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 ZNF75CPQ92670 426 aaPredicted RBP10.8□□□□□ -0.68
VCL-201ENST00000211998 FAM84BQ96KN1 310 aaPredicted RBP10.8□□□□□ -0.68
VCL-201ENST00000211998 SPRTNQ9H040 489 aaPredicted RBP10.8□□□□□ -0.68
VCL-201ENST00000211998 SEMA6AQ9H2E6 1030 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 ARHGAP20Q9P2F6 1191 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 SLC24A2Q9UI40 661 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 WFS1O76024 890 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 FCGR1AP12314 374 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 PTENP60484 403 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 FOXO4P98177 505 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 SPANXN2Q5MJ10 180 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 MTMR8Q96EF0 704 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 CRAMP1Q96RY5 1269 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 DMTF1Q9Y222 760 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 TRPM1Q7Z4N2 1603 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 PNMA8CA0A1B0GUJ8 204 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 RAD23AP54725 363 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 NCALDP61601 193 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 IL5RAQ01344 420 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 TAF5Q15542 800 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 NRF1Q16656 503 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 PDZK1Q5T2W1 519 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 SH3TC2Q8TF17 1288 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 RBAKQ9NYW8 714 aaPredicted RBP10.8□□□□□ -0.68
VCL-201ENST00000211998 PCDHGB4Q9UN71 923 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 PRELID1Q9Y255 219 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 BTBD3Q9Y2F9 522 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 FARP1Q9Y4F1 1045 aaPredicted RBP10.8□□□□□ -0.68
VCL-201ENST00000211998 TAF6LQ9Y6J9 622 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 CLTCL1P53675 1640 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 TRIM43BA6NCK2 446 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 FESP07332 822 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 TTKP33981 857 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.8□□□□□ -0.684e-7■■■■□ 20.3
VCL-201ENST00000211998 POLD3Q15054 466 aaPredicted RBP10.8□□□□□ -0.68
VCL-201ENST00000211998 CNGA2Q16280 664 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 DUOXA2Q1HG44 320 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 CDKAL1Q5VV42 579 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 SPATA18Q8TC71 538 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 RORBQ92753 470 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 BORCS5Q969J3 196 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 MCEEQ96PE7 176 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 TIMMDC1Q9NPL8 285 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 AGO2Q9UKV8 859 aaKnown RBP10.8□□□□□ -0.68
VCL-201ENST00000211998 DSEQ9UL01 958 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 AXIN2Q9Y2T1 843 aa10.8□□□□□ -0.68
VCL-201ENST00000211998 CST8O60676 142 aa10.79□□□□□ -0.68
VCL-201ENST00000211998 MYO1DO94832 1006 aa10.79□□□□□ -0.68
VCL-201ENST00000211998 IMPDH2P12268 514 aa10.79□□□□□ -0.68
VCL-201ENST00000211998 RIPK1Q13546 671 aa10.79□□□□□ -0.68
VCL-201ENST00000211998 UGP2Q16851 508 aa10.79□□□□□ -0.68
VCL-201ENST00000211998 SLC45A4Q5BKX6 768 aa10.79□□□□□ -0.68
VCL-201ENST00000211998 LRRC8DQ7L1W4 858 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms