RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	YMR103C	Q04436	120 aa		2.75	□□□□□ -1.97
SSM4	YIL030C	HSP12	P22943	109 aa	Known RBP	2.75	□□□□□ -1.97
SSM4	YIL030C	HYP2	P23301	157 aa	Known RBP	2.75	□□□□□ -1.97
SSM4	YIL030C	SNU13	P39990	126 aa	Known RBP	2.75	□□□□□ -1.97
SSM4	YIL030C	REE1	P40893	198 aa		2.75	□□□□□ -1.97
SSM4	YIL030C	YLR236C	A0A023PZG4	107 aa		2.75	□□□□□ -1.97
SSM4	YIL030C	LDB16	P25587	256 aa		2.74	□□□□□ -1.97
SSM4	YIL030C	FAB1	P34756	2278 aa		2.74	□□□□□ -1.97
SSM4	YIL030C	STF1	P01098	86 aa		2.74	□□□□□ -1.97
SSM4	YIL030C	PCL2	P25693	308 aa		2.74	□□□□□ -1.97
SSM4	YIL030C	YHP1	Q04116	353 aa		2.74	□□□□□ -1.97
SSM4	YIL030C	YDL009C	Q12210	107 aa		2.74	□□□□□ -1.97
SSM4	YIL030C	PHD1	P36093	366 aa		2.74	□□□□□ -1.97
SSM4	YIL030C	MRPL49	P40858	161 aa	Predicted RBP	2.74	□□□□□ -1.97
SSM4	YIL030C	LSM6	Q06406	86 aa	Known RBP	2.74	□□□□□ -1.97
SSM4	YIL030C	TRP1	P00912	224 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	RPS23A	P0CX29	145 aa	Known RBP	2.73	□□□□□ -1.97
SSM4	YIL030C	RPS23B	P0CX30	145 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	MID2	P36027	376 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	RXT3	Q07458	294 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	YMR175W-A	Q3E766	64 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	YMR141C	P40211	102 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	OST2	P46964	130 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	SLO1	Q3E784	85 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	RUB1	Q03919	77 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	IRC23	Q08416	157 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	TMA7	Q3E764	64 aa	Known RBP	2.73	□□□□□ -1.97
SSM4	YIL030C	YNL146C-A	Q3E7Z1	64 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	IGO2	Q9P305	131 aa		2.73	□□□□□ -1.97
SSM4	YIL030C	VTC1	P40046	129 aa	RIP-Chip data	2.72	□□□□□ -1.97	RIP-Chip
SSM4	YIL030C	MIC26	P50087	233 aa		2.72	□□□□□ -1.97
SSM4	YIL030C	YTH1	Q06102	208 aa	Predicted RBP	2.72	□□□□□ -1.97
SSM4	YIL030C	BNA1	P47096	177 aa		2.72	□□□□□ -1.97
SSM4	YIL030C	YJR115W	P47152	169 aa		2.72	□□□□□ -1.97
SSM4	YIL030C	PKR1	Q03880	122 aa	Known RBP	2.72	□□□□□ -1.97
SSM4	YIL030C	TIR2	P33890	251 aa		2.72	□□□□□ -1.97
SSM4	YIL030C	AIM34	Q03673	198 aa		2.72	□□□□□ -1.97
SSM4	YIL030C	AIR2	Q12476	344 aa	Known RBP	2.72	□□□□□ -1.97
SSM4	YIL030C	YBR200W-A	Q3E755	54 aa		2.72	□□□□□ -1.97
SSM4	YIL030C	INO2	P26798	304 aa		2.71	□□□□□ -1.98
SSM4	YIL030C	YKL069W	P36088	180 aa		2.71	□□□□□ -1.98
SSM4	YIL030C	PCL7	P40186	285 aa		2.71	□□□□□ -1.98
SSM4	YIL030C	YNL234W	P53857	426 aa		2.71	□□□□□ -1.98
SSM4	YIL030C	YCR085W	P25650	117 aa		2.71	□□□□□ -1.98
SSM4	YIL030C	EOS1	P53938	366 aa		2.71	□□□□□ -1.98
SSM4	YIL030C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	2.71	□□□□□ -1.98	not detected
SSM4	YIL030C	APS1	P35181	156 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	YHR140W	P38842	239 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	CRZ1	P53968	678 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	AIM11	P87275	137 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	YOL160W	Q08321	113 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	UBC5	P15732	148 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	CWP1	P28319	239 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	DAD2	P36162	133 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	MBB1	P39534	108 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	PIR5	P46999	287 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	UBC11	P52492	156 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	NUP53	Q03790	475 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	YCL021W-A	Q96VH3	125 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	YHR022C	P38763	256 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	SVP26	P38869	228 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	LTP1	P40347	161 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	YPL038W-A	Q3E7B4	63 aa		2.7	□□□□□ -1.98
SSM4	YIL030C	RRG8	Q06109	277 aa		2.69	□□□□□ -1.98
SSM4	YIL030C	YLR042C	Q07990	161 aa		2.69	□□□□□ -1.98
SSM4	YIL030C	RNH203	Q12338	110 aa		2.69	□□□□□ -1.98
SSM4	YIL030C	MST27	P53176	234 aa		2.69	□□□□□ -1.98
SSM4	YIL030C	DIA1	P54005	336 aa		2.69	□□□□□ -1.98
SSM4	YIL030C	SED1	Q01589	338 aa		2.69	□□□□□ -1.98
SSM4	YIL030C	YPR013C	Q12145	317 aa		2.69	□□□□□ -1.98
SSM4	YIL030C	RPL29	P05747	59 aa	Predicted RBP	2.69	□□□□□ -1.98
SSM4	YIL030C	YCH1	P42937	148 aa		2.69	□□□□□ -1.98
SSM4	YIL030C	ADH1	P00330	348 aa	Known RBP	2.68	□□□□□ -1.98
SSM4	YIL030C	CTR2	P38865	189 aa		2.68	□□□□□ -1.98
SSM4	YIL030C	IES6	P32617	166 aa		2.68	□□□□□ -1.98
SSM4	YIL030C	YER181C	P40097	107 aa		2.68	□□□□□ -1.98
SSM4	YIL030C	SBH2	P52871	88 aa		2.68	□□□□□ -1.98
SSM4	YIL030C	RPL42A	P0CX27	106 aa	Known RBP	2.68	□□□□□ -1.98
SSM4	YIL030C	RPL42B	P0CX28	106 aa	Known RBP	2.68	□□□□□ -1.98
SSM4	YIL030C	YAR029W	P39549	74 aa		2.68	□□□□□ -1.98
SSM4	YIL030C	YER145C-A	A0A023PYF4	145 aa		2.67	□□□□□ -1.98
SSM4	YIL030C	RPS28B	P0C0X0	67 aa	Known RBP	2.67	□□□□□ -1.98
SSM4	YIL030C	TOM6	P33448	61 aa		2.67	□□□□□ -1.98
SSM4	YIL030C	YGR164W	P53291	111 aa		2.67	□□□□□ -1.98
SSM4	YIL030C	DAD4	P69851	72 aa		2.67	□□□□□ -1.98
SSM4	YIL030C	RPS28A	Q3E7X9	67 aa	Predicted RBP	2.67	□□□□□ -1.98
SSM4	YIL030C	MRPL24	P36525	258 aa	Predicted RBP	2.67	□□□□□ -1.98
SSM4	YIL030C	BRR2	P32639	2163 aa	Known RBP	2.67	□□□□□ -1.98
SSM4	YIL030C	PEX17	P40155	199 aa		2.67	□□□□□ -1.98
SSM4	YIL030C	WWM1	P43582	211 aa	Known RBP	2.67	□□□□□ -1.98
SSM4	YIL030C	OXA1	P39952	402 aa		2.66	□□□□□ -1.98
SSM4	YIL030C	FOL3	Q12676	427 aa	Predicted RBP	2.66	□□□□□ -1.98
SSM4	YIL030C	POR2	P40478	281 aa		2.66	□□□□□ -1.98
SSM4	YIL030C	YLR302C	O13544	120 aa		2.65	□□□□□ -1.98
SSM4	YIL030C	QCR8	P08525	94 aa		2.65	□□□□□ -1.98
SSM4	YIL030C	SKI6	P46948	246 aa	Predicted RBP	2.65	□□□□□ -1.98
SSM4	YIL030C	YDL241W	Q07738	123 aa		2.65	□□□□□ -1.98
SSM4	YIL030C	RRT1	P38192	103 aa		2.65	□□□□□ -1.99
SSM4	YIL030C	SEN1	Q00416	2231 aa	Known RBP	2.65	□□□□□ -1.99
SSM4	YIL030C	SHU1	P38751	150 aa		2.65	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 60.7 ms