RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TRIM51Q9BSJ1 452 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 LSM14BQ9BX40 385 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 RAB20Q9NX57 234 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CEP72Q9P209 647 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 STOML2Q9UJZ1 356 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 STAP1Q9ULZ2 295 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 DAGLAQ9Y4D2 1042 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ADGRG1Q9Y653 693 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GRIN2BQ13224 1484 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ATAD2BQ9ULI0 1458 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 E9PCH4 1651 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 A0A1W2PRG6 482 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GJA1P17302 382 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GARTP22102 1010 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CMA1P23946 247 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 S100A12P80511 92 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PPP4R3CPQ6ZMV5 832 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ATCAYQ86WG3 371 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NOC4LQ9BVI4 516 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 WDR11Q9BZH6 1224 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SLC13A1Q9BZW2 595 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NGBQ9NPG2 151 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 FKBP14Q9NWM8 211 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ASAP1Q9ULH1 1129 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SYNPO2Q9UMS6 1093 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 FAM32AQ9Y421 112 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GAKO14976 1311 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PTPN13Q12923 2485 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 RAPGEF2Q9Y4G8 1499 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SMCO3A2RU48 225 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TTLL13PA6NNM8 815 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GAS2O43903 313 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CFBP00751 764 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 INHBAP08476 426 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CASP1P29466 404 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CCT3P49368 545 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 HSD17B4P51659 736 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GTF2A2P52657 109 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 AP3M2P53677 418 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 IL2P60568 153 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ATP2C1P98194 919 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CNTN1Q12860 1018 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 RCN1Q15293 331 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 USF2Q15853 346 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 Q4G0T1 1027 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 AKIRIN2Q53H80 203 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TCEAL6Q6IPX3 200 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NIPAL1Q6NVV3 410 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 FSTL5Q8N475 847 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MRPS31Q92665 395 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF560Q96MR9 790 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 COLEC11Q9BWP8 271 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GCOM2Q9BZD3 368 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SLC12A5Q9H2X9 1139 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TNPO3Q9Y5L0 923 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 EMILIN1Q9Y6C2 1016 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SSH2Q76I76 1423 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ARPC4-TTLL3A0A0A6YYG9 625 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 G3V2T6 193 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 RAD51CO43502 376 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GCNT3O95395 438 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PNMA6AP0CW24 399 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MTHFD1P11586 935 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 EIF4A3P38919 411 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 STAT1P42224 750 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 RGS4P49798 205 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 EPHB4P54760 987 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ACTR3P61158 418 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ETF1P62495 437 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MRPL49Q13405 166 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SLC39A6Q13433 755 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CBFBQ13951 182 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 OTUD3Q5T2D3 398 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 BEND3Q5T5X7 828 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SLC9A4Q6AI14 798 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ACAD11Q709F0 780 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 DNAAF3Q8N9W5 541 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 THUMPD2Q9BTF0 503 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 KIFC1Q9BW19 673 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NRBP1Q9UHY1 535 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 RBM7Q9Y580 266 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GOLGA8SH3BPF8 625 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SLC25A12O75746 678 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SASH1O94885 1247 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SAT1P21673 171 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MAGEA1P43355 309 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PRELPP51888 382 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 BTN3A2P78410 334 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SULT6B1Q6IMI4 303 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GPR141Q7Z602 305 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF483Q8TF39 744 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 FAM161BQ96MY7 647 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 DEPDC7Q96QD5 511 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CDRT15Q96T59 188 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CTNNAL1Q9UBT7 734 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PFDN2Q9UHV9 154 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 DMTF1Q9Y222 760 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 IFT52Q9Y366 437 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 L3MBTL1Q9Y468 752 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 FGD6Q6ZV73 1430 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms