RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 ZEB1P37275 1124 aaPredicted RBP5.03□□□□□ -1.6
USP40-204ENST00000427947 ALDH5A1P51649 535 aaPredicted RBP5.03□□□□□ -1.6
USP40-204ENST00000427947 HTRA4P83105 476 aaPredicted RBP5.03□□□□□ -1.6
USP40-204ENST00000427947 ZIK1Q3SY52 487 aaPredicted RBP5.03□□□□□ -1.6
USP40-204ENST00000427947 KLHDC7AQ5VTJ3 777 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 RGS7BPQ6MZT1 257 aaPredicted RBP5.03□□□□□ -1.6
USP40-204ENST00000427947 TSHZ1Q6ZSZ6 1077 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 UNC13DQ70J99 1090 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 FAM186BQ8IYM0 893 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 LNX2Q8N448 690 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 SLC44A3Q8N4M1 653 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 TOR1AIP2Q8NFQ8 470 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 MYCBPAPQ8TBZ2 947 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 IPCEF1Q8WWN9 437 aaPredicted RBP5.03□□□□□ -1.6
USP40-204ENST00000427947 NEU4Q8WWR8 484 aaPredicted RBP5.03□□□□□ -1.6
USP40-204ENST00000427947 FAM136AQ96C01 138 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 IQCDQ96DY2 449 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 CCDC138Q96M89 665 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 RIPOR3Q96MK2 946 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 PTDSS2Q9BVG9 487 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 ACTRT3Q9BYD9 372 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 ZNF700Q9H0M5 742 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 CHST8Q9H2A9 424 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 CYP4F11Q9HBI6 524 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 SERHLQ9NQF3 203 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 HS3ST3A1Q9Y663 406 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 LOC102723971A0A1B0GUV8 181 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 H7C4K7 107 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 RAB27BO00194 218 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 NCK2O43639 380 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 FZD7O75084 574 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 ANXA2P07355 339 aaKnown RBP5.02□□□□□ -1.61
USP40-204ENST00000427947 SRGNP10124 158 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 TXNP10599 105 aaKnown RBP5.02□□□□□ -1.61
USP40-204ENST00000427947 PPIFP30405 207 aaKnown RBP5.02□□□□□ -1.61
USP40-204ENST00000427947 PRKAG1P54619 331 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 MYO1EQ12965 1108 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 CACHD1Q5VU97 1274 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 ICE2Q659A1 982 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 SFRP4Q6FHJ7 346 aaPredicted RBP5.02□□□□□ -1.61
USP40-204ENST00000427947 VRK3Q8IV63 474 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 YAF2Q8IY57 180 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 Q8N1X5 172 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 FAM109AQ8N4B1 249 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 OR2C3Q8N628 320 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 ATP11CQ8NB49 1132 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 BPIFB1Q8TDL5 484 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 LARP4BQ92615 738 aaKnown RBP5.02□□□□□ -1.61
USP40-204ENST00000427947 GJA10Q969M2 543 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 AIFM2Q9BRQ8 373 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 CXorf36Q9H7Y0 433 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 NLRC4Q9NPP4 1024 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 STARD7Q9NQZ5 370 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 KCTD5Q9NXV2 234 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 FNIP2Q9P278 1114 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 ZNF212Q9UDV6 495 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 SERTAD3Q9UJW9 196 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 NDRG4Q9ULP0 352 aaKnown RBP5.02□□□□□ -1.61
USP40-204ENST00000427947 DMTF1Q9Y222 760 aa5.02□□□□□ -1.61
USP40-204ENST00000427947 KRTAP4-8A0A0G2JLE6 195 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 APOL1O14791 398 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 YY2O15391 372 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 CCP110O43303 1012 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 THAP12O43422 761 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 RHOP08100 348 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 ACVR2AP27037 513 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 HNRNPMP52272 730 aaKnown RBP eCLIP5.01□□□□□ -1.61
USP40-204ENST00000427947 ITGA8P53708 1063 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 RHBDL3P58872 404 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 BLOC1S1P78537 153 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 ITIH3Q06033 890 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 E2F2Q14209 437 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 SLC29A2Q14542 456 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 INSCQ1MX18 579 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 FAM209BQ5JX69 171 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 Q6YL49 198 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 DBX2Q6ZNG2 339 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 RNF44Q7L0R7 432 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 DPP9Q86TI2 863 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 RNF152Q8N8N0 203 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 CAVIN3Q969G5 261 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 NELL2Q99435 816 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 AMBRA1Q9C0C7 1298 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 CERS4Q9HA82 394 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 XPNPEP3Q9NQH7 507 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 TBC1D23Q9NUY8 699 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 PADI4Q9UM07 663 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 SSX2IPQ9Y2D8 614 aa5.01□□□□□ -1.61
USP40-204ENST00000427947 A0A1W2PPC4 97 aa5□□□□□ -1.61
USP40-204ENST00000427947 PPM1DO15297 605 aa5□□□□□ -1.61
USP40-204ENST00000427947 PROM1O43490 865 aa5□□□□□ -1.61
USP40-204ENST00000427947 PEX1O43933 1283 aa5□□□□□ -1.61
USP40-204ENST00000427947 RASAL1O95294 804 aa5□□□□□ -1.61
USP40-204ENST00000427947 CHRM2P08172 466 aa5□□□□□ -1.61
USP40-204ENST00000427947 PDHA1P08559 390 aa5□□□□□ -1.61
USP40-204ENST00000427947 HKR1P10072 659 aa5□□□□□ -1.61
USP40-204ENST00000427947 FGFR2P21802 821 aa5□□□□□ -1.61
USP40-204ENST00000427947 KCNA3P22001 575 aa5□□□□□ -1.61
USP40-204ENST00000427947 IL1R2P27930 398 aa5□□□□□ -1.61
USP40-204ENST00000427947 AVPR1BP47901 424 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms