RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 AEBP2Q6ZN18 517 aaPredicted RBP20.55■□□□□ 0.88
USP40-204ENST00000427947 CHIC1Q5VXU3 224 aa20.25■□□□□ 0.83
USP40-204ENST00000427947 PHF23Q9BUL5 403 aaPredicted RBP17.83■□□□□ 0.44
USP40-204ENST00000427947 SENP3Q9H4L4 574 aaPredicted RBP17.41■□□□□ 0.38
USP40-204ENST00000427947 PLPPR3Q6T4P5 718 aa16.54■□□□□ 0.24
USP40-204ENST00000427947 FOXD1Q16676 465 aa16.13■□□□□ 0.17
USP40-204ENST00000427947 ADRA2BP18089 450 aa15.69■□□□□ 0.1
USP40-204ENST00000427947 PPP6R1Q9UPN7 881 aa15.68■□□□□ 0.1
USP40-204ENST00000427947 PIAS4Q8N2W9 510 aaPredicted RBP15.29■□□□□ 0.04
USP40-204ENST00000427947 MSH5O43196 834 aa14.8□□□□□ -0.04
USP40-204ENST00000427947 PPP4R3CPQ6ZMV5 832 aa14.6□□□□□ -0.07
USP40-204ENST00000427947 KCNA4P22459 653 aa14.5□□□□□ -0.09
USP40-204ENST00000427947 SCAF1Q9H7N4 1312 aaKnown RBP14.34□□□□□ -0.11
USP40-204ENST00000427947 NCBP3Q53F19 620 aaKnown RBP14.27□□□□□ -0.13
USP40-204ENST00000427947 MAPK8IP2Q13387 824 aaPredicted RBP14.17□□□□□ -0.14
USP40-204ENST00000427947 CNKSR2Q8WXI2 1034 aa14.14□□□□□ -0.15
USP40-204ENST00000427947 NPM3O75607 178 aaKnown RBP14.07□□□□□ -0.16
USP40-204ENST00000427947 DMRT2Q9Y5R5 561 aa13.92□□□□□ -0.18
USP40-204ENST00000427947 SLC4A1APQ9BWU0 796 aaKnown RBP13.84□□□□□ -0.19
USP40-204ENST00000427947 RNF216Q9NWF9 866 aaPredicted RBP13.82□□□□□ -0.2
USP40-204ENST00000427947 EHMT2Q96KQ7 1210 aa13.72□□□□□ -0.21
USP40-204ENST00000427947 HOXD11P31277 338 aaPredicted RBP13.7□□□□□ -0.22
USP40-204ENST00000427947 DNAJC5BQ9UF47 199 aa13.57□□□□□ -0.24
USP40-204ENST00000427947 CSRNP3Q8WYN3 585 aa13.42□□□□□ -0.26
USP40-204ENST00000427947 DCAF8L1A6NGE4 600 aa13.37□□□□□ -0.27
USP40-204ENST00000427947 ZBTB22O15209 634 aa13.34□□□□□ -0.27
USP40-204ENST00000427947 FOXD4L1Q9NU39 408 aa13.28□□□□□ -0.28
USP40-204ENST00000427947 SLC4A2P04920 1241 aa13.23□□□□□ -0.29
USP40-204ENST00000427947 POTEDQ86YR6 584 aa13.14□□□□□ -0.31
USP40-204ENST00000427947 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.09□□□□□ -0.311e-7■■■□□ 16.6
USP40-204ENST00000427947 MYCNP04198 464 aaPredicted RBP13□□□□□ -0.33
USP40-204ENST00000427947 U3KPZ7 1027 aaPredicted RBP12.89□□□□□ -0.35
USP40-204ENST00000427947 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.79□□□□□ -0.36
USP40-204ENST00000427947 HNRNPUL2Q1KMD3 747 aaKnown RBP12.79□□□□□ -0.36
USP40-204ENST00000427947 ATXN8OSP0DMR3 200 aa12.76□□□□□ -0.37
USP40-204ENST00000427947 SAMD1Q6SPF0 538 aaPredicted RBP12.75□□□□□ -0.37
USP40-204ENST00000427947 RNF39Q9H2S5 420 aa12.69□□□□□ -0.38
USP40-204ENST00000427947 ATF5Q9Y2D1 282 aaPredicted RBP12.64□□□□□ -0.39
USP40-204ENST00000427947 APLP2Q06481 763 aa12.6□□□□□ -0.39
USP40-204ENST00000427947 C1QBPQ07021 282 aaKnown RBP12.56□□□□□ -0.4
USP40-204ENST00000427947 SPINK5Q9NQ38 1064 aaPredicted RBP12.48□□□□□ -0.41
USP40-204ENST00000427947 CAPN15O75808 1086 aa12.44□□□□□ -0.42
USP40-204ENST00000427947 TRHP20396 242 aaPredicted RBP12.43□□□□□ -0.42
USP40-204ENST00000427947 ZNF219Q9P2Y4 722 aaPredicted RBP12.42□□□□□ -0.42
USP40-204ENST00000427947 CACNB1Q02641 598 aaPredicted RBP12.25□□□□□ -0.45
USP40-204ENST00000427947 POLA2Q14181 598 aa12.25□□□□□ -0.45
USP40-204ENST00000427947 ABCB7O75027 752 aa12.23□□□□□ -0.45
USP40-204ENST00000427947 DSG3P32926 999 aa12.15□□□□□ -0.46
USP40-204ENST00000427947 FKBP8Q14318 412 aa12.15□□□□□ -0.46
USP40-204ENST00000427947 FBLN2P98095 1184 aa12.11□□□□□ -0.47
USP40-204ENST00000427947 MKRN4PQ13434 485 aaPredicted RBP12.09□□□□□ -0.47
USP40-204ENST00000427947 ZBTB12Q9Y330 459 aaPredicted RBP12.05□□□□□ -0.48
USP40-204ENST00000427947 SPDYE4A6NLX3 237 aa11.93□□□□□ -0.5
USP40-204ENST00000427947 OSCARQ8IYS5 282 aa11.85□□□□□ -0.51
USP40-204ENST00000427947 SPDYE2BA6NHP3 402 aa11.74□□□□□ -0.53
USP40-204ENST00000427947 SPDYE6P0CI01 402 aa11.74□□□□□ -0.53
USP40-204ENST00000427947 SPDYE2Q495Y8 402 aa11.74□□□□□ -0.53
USP40-204ENST00000427947 ZNF692Q9BU19 519 aaPredicted RBP11.74□□□□□ -0.53
USP40-204ENST00000427947 PROM2Q8N271 834 aa11.72□□□□□ -0.53
USP40-204ENST00000427947 SSUH2Q9Y2M2 353 aa11.67□□□□□ -0.54
USP40-204ENST00000427947 FBXO3Q9UK99 471 aa11.64□□□□□ -0.55
USP40-204ENST00000427947 PABPN1Q86U42 306 aaKnown RBP eCLIP11.6□□□□□ -0.55
USP40-204ENST00000427947 RBM42Q9BTD8 480 aaKnown RBP11.58□□□□□ -0.56
USP40-204ENST00000427947 VASPP50552 380 aaPredicted RBP11.48□□□□□ -0.57
USP40-204ENST00000427947 AKT1S1Q96B36 256 aa11.47□□□□□ -0.57
USP40-204ENST00000427947 STAG3Q9UJ98 1225 aa11.42□□□□□ -0.58
USP40-204ENST00000427947 AMER1Q5JTC6 1135 aaPredicted RBP11.39□□□□□ -0.59
USP40-204ENST00000427947 RTN4Q9NQC3 1192 aaKnown RBP11.38□□□□□ -0.59
USP40-204ENST00000427947 REM2Q8IYK8 340 aaPredicted RBP11.37□□□□□ -0.59
USP40-204ENST00000427947 SPDYE1Q8NFV5 336 aaPredicted RBP11.36□□□□□ -0.59
USP40-204ENST00000427947 IFNLR1Q8IU57 520 aaPredicted RBP11.34□□□□□ -0.59
USP40-204ENST00000427947 CLEC11AQ9Y240 323 aa11.33□□□□□ -0.6
USP40-204ENST00000427947 PLCD3Q8N3E9 789 aa11.31□□□□□ -0.6
USP40-204ENST00000427947 MIER1Q8N108 512 aa11.3□□□□□ -0.6
USP40-204ENST00000427947 KLHL34Q8N239 644 aa11.26□□□□□ -0.61
USP40-204ENST00000427947 PITPNM1O00562 1244 aa11.25□□□□□ -0.61
USP40-204ENST00000427947 PRR29P0C7W0 189 aa11.24□□□□□ -0.61
USP40-204ENST00000427947 PLEKHG5O94827 1062 aa11.23□□□□□ -0.61
USP40-204ENST00000427947 SPOCK2Q92563 424 aa11.17□□□□□ -0.62
USP40-204ENST00000427947 ZBTB47Q9UFB7 747 aaPredicted RBP11.16□□□□□ -0.62
USP40-204ENST00000427947 CREBZFQ9NS37 354 aa11.12□□□□□ -0.63
USP40-204ENST00000427947 PKD2Q13563 968 aa11.03□□□□□ -0.64
USP40-204ENST00000427947 CHRDL2Q6WN34 429 aa11.03□□□□□ -0.64
USP40-204ENST00000427947 MNX1P50219 401 aaPredicted RBP11.02□□□□□ -0.65
USP40-204ENST00000427947 CHADLQ6NUI6 762 aa11.02□□□□□ -0.65
USP40-204ENST00000427947 CIZ1Q9ULV3 898 aaPredicted RBP10.99□□□□□ -0.65
USP40-204ENST00000427947 PRKAR2AP13861 404 aaKnown RBP10.98□□□□□ -0.65
USP40-204ENST00000427947 FXR2P51116 673 aaKnown RBP eCLIP10.98□□□□□ -0.65
USP40-204ENST00000427947 NUBP1P53384 320 aa10.97□□□□□ -0.65
USP40-204ENST00000427947 ECM2O94769 699 aaPredicted RBP10.94□□□□□ -0.66
USP40-204ENST00000427947 NPM1P06748 294 aaKnown RBP eCLIP10.94□□□□□ -0.66
USP40-204ENST00000427947 PIP4P2Q8N4L2 257 aa10.93□□□□□ -0.66
USP40-204ENST00000427947 FARP1Q9Y4F1 1045 aaPredicted RBP10.92□□□□□ -0.66
USP40-204ENST00000427947 DCAF8L2P0C7V8 631 aa10.9□□□□□ -0.66
USP40-204ENST00000427947 GSE1Q14687 1217 aa10.9□□□□□ -0.66
USP40-204ENST00000427947 DCAF8Q5TAQ9 597 aa10.9□□□□□ -0.66
USP40-204ENST00000427947 FAM212AQ96EL1 285 aa10.9□□□□□ -0.66
USP40-204ENST00000427947 RASEFQ8IZ41 740 aa10.89□□□□□ -0.67
USP40-204ENST00000427947 TRIM41Q8WV44 630 aa10.84□□□□□ -0.67
USP40-204ENST00000427947 RGL2O15211 777 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms