RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS54	YDR027C	RPS1A	P33442	255 aa	Known RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	SRL3	P36167	246 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	YBR242W	P38331	238 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	RGI1	P40043	161 aa	Predicted RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	YER137C	P40083	148 aa	Known RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	CUP9	P41817	306 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	YJL027C	P47063	138 aa	Predicted RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	COG5	P53951	403 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	RGM1	Q00453	211 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	AIM34	Q03673	198 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	YDR249C	Q03787	373 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	GPI17	Q04080	534 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	SMD2	Q06217	110 aa	Known RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	YLR053C	Q12026	108 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	DAS2	Q12084	232 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	PET20	Q99373	253 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	RAS2	P01120	322 aa	Known RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	CMD1	P06787	147 aa	Known RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	PUT1	P09368	476 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	MAG1	P22134	296 aa	Known RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	SEC14	P24280	304 aa	Known RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	MRPL24	P36525	258 aa	Predicted RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	DER1	P38307	211 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	AME1	P38313	324 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	CYC2	P38909	366 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	YGR201C	P42936	225 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	DAN1	P47178	298 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	EMC4	P53073	190 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	DML1	Q03652	475 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	PRP11	Q07350	266 aa	Predicted RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	YLR046C	Q12253	270 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	YOR214C	Q12282	236 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	ATO3	Q12359	275 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	PEX11	Q12462	236 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	IGO2	Q9P305	131 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	KIN28	P06242	306 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	PET54	P10834	293 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	TRR1	P29509	319 aa	Known RBP	0.87	□□□□□ -2.27
VPS54	YDR027C	OCH1	P31755	480 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	MRPL17	P36528	281 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	FCY21	P40039	528 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	ICE2	P40499	491 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	GVP36	P40531	326 aa	Known RBP	0.87	□□□□□ -2.27
VPS54	YDR027C	ORM1	P53224	222 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	YNL184C	P53876	108 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	CWC27	Q02770	301 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	SWP1	Q02795	286 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	PIR1	Q03178	341 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	MRPS8	Q03799	155 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	SPC24	Q04477	213 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	NOC4	Q06512	552 aa	Predicted RBP	0.87	□□□□□ -2.27
VPS54	YDR027C	OCA6	Q12454	224 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	YGR035W-A	Q45U48	73 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	Q0144	Q9ZZW2	109 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	TIM9	O74700	87 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	0.87	□□□□□ -2.27	not detected
VPS54	YDR027C	ATP15	P21306	62 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	RPS1B	P23248	255 aa	Known RBP	0.87	□□□□□ -2.27
VPS54	YDR027C	BUD23	P25627	275 aa	Predicted RBP	0.87	□□□□□ -2.27
VPS54	YDR027C	SUA7	P29055	345 aa	Predicted RBP	0.87	□□□□□ -2.27
VPS54	YDR027C	PRS3	P38689	320 aa	Known RBP	0.87	□□□□□ -2.27
VPS54	YDR027C	GAA1	P39012	614 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	UBC12	P52491	188 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	YGR017W	P53210	297 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	HHO1	P53551	258 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	TMA20	P89886	181 aa	Predicted RBP	0.87	□□□□□ -2.27
VPS54	YDR027C	SNO1	Q03144	224 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	VPS71	Q03433	280 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	CGI121	Q03705	181 aa	Known RBP	0.87	□□□□□ -2.27
VPS54	YDR027C	FCY1	Q12178	158 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	RTR2	Q12378	196 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	EMC6	Q12431	108 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	YLR412C-A	Q3E742	68 aa		0.87	□□□□□ -2.27
VPS54	YDR027C	MDM35	O60200	86 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	RPB3	P16370	318 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	PEX4	P29340	183 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	YBL010C	P32788	280 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	SKG1	P36169	355 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	GLE2	P40066	365 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	YGR219W	P53307	113 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	YIP3	P53633	176 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	YNR077C	P53758	84 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	NRK1	P53915	240 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	HHT1	P61830	136 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	SAE3	P89114	91 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	TSC3	Q3E790	80 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	MBF1	O14467	151 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	RPL35A	P0CX84	120 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	RPL35B	P0CX85	120 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	PET9	P18239	318 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	BET1	P22804	142 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	TAH1	P25638	111 aa	Predicted RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	YCR090C	P25654	182 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	SUI1	P32911	108 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	FMP23	P38231	175 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	YPT31	P38555	223 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	AIM2	P39721	246 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	PGD1	P40356	397 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	POG1	P40473	351 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	HPM1	P40481	377 aa		0.86	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 51.8 ms