RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 SSRP1Q08945 709 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 SPIRE1Q08AE8 756 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 TRDNQ13061 729 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 SYCP1Q15431 976 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 TKFCQ3LXA3 575 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 ADCK5Q3MIX3 580 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 ASPRV1Q53RT3 343 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 CCDC178Q5BJE1 867 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 IFIT1BQ5T764 474 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 MFSD14CQ5VZR4 134 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 BORAQ6PGQ7 559 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 MAMDC4Q6UXC1 1216 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 RALYLQ86SE5 291 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 FAM124AQ86V42 546 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 TRIM48Q8IWZ4 208 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 SYAP1Q96A49 352 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 LOXL4Q96JB6 756 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 TMEM209Q96SK2 561 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 RBM15Q96T37 977 aaKnown RBP eCLIP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 KATNBL1Q9H079 304 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 TMEM168Q9H0V1 697 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 ACAD9Q9H845 621 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 LY9Q9HBG7 655 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 FBXO40Q9UH90 709 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 DDX20Q9UHI6 824 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 MAD2L2Q9UI95 211 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 CCPG1Q9ULG6 757 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 ZDHHC9Q9Y397 364 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 WDR19Q8NEZ3 1342 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 SH2B2O14492 632 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 SEPT4O43236 478 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 PRC1O43663 620 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 CYTH3O43739 400 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 MBD3O95983 291 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 TFRCP02786 760 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 TPM3P06753 285 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 PARP1P09874 1014 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 COL6A1P12109 1028 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 ATP2B1P20020 1258 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 NUCB2P80303 420 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 KRTAP1-1Q07627 177 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 GRM4Q14833 912 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 WTAPQ15007 396 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 CDC37Q16543 378 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 QRICH1Q2TAL8 776 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 PAN2Q504Q3 1202 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 ANO1Q5XXA6 986 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 VASNQ6EMK4 673 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 SLC30A10Q6XR72 485 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 CLEC17AQ6ZS10 378 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 ARMCX2Q7L311 632 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 ADGRF4Q8IZF3 695 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 ANKRD35Q8N283 1001 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 MSL3Q8N5Y2 521 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 UHMK1Q8TAS1 419 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 PIBF1Q8WXW3 757 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 MTMR8Q96EF0 704 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 PAWRQ96IZ0 340 aaKnown RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 TCEANC2Q96MN5 208 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 MYL10Q9BUA6 226 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 JMJD4Q9H9V9 463 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 SLC5A4Q9NY91 659 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 CYP39A1Q9NYL5 469 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 DSEQ9UL01 958 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 MSRB2Q9Y3D2 182 aa5.57□□□□□ -1.52
CSMD3-208ENST00000497026 CTDP1Q9Y5B0 961 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-208ENST00000497026 KIAA1217Q5T5P2 1943 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 LTBP2Q14767 1821 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 ERICH2A1L162 156 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 KLRF2D3W0D1 207 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 FAM47E-STBD1D6RA91 191 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 PLATP00750 562 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 FAM153BP0C7A2 387 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 FAHP16930 419 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 CAPN2P17655 700 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 RXRAP19793 462 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 PTGS1P23219 599 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 CNGA1P29973 690 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 HSPA4P34932 840 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 ALDH5A1P51649 535 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-208ENST00000497026 ZSCAN23Q3MJ62 389 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 USH1GQ495M9 461 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-208ENST00000497026 NUDT10Q8NFP7 164 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.56□□□□□ -1.52
CSMD3-208ENST00000497026 MORC4Q8TE76 937 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 TBC1D5Q92609 795 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 SECISBP2LQ93073 1101 aaKnown RBP5.56□□□□□ -1.52
CSMD3-208ENST00000497026 MBD6Q96DN6 1003 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 NUDT11Q96G61 164 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 C8orf49Q96NF6 230 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 GPR20Q99678 358 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 ZFYVE21Q9BQ24 234 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 ALG1Q9BT22 464 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 LRRC2Q9BYS8 371 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 RIOX1Q9H6W3 641 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 GEMIN8Q9NWZ8 242 aaKnown RBP5.56□□□□□ -1.52
CSMD3-208ENST00000497026 SMPD4Q9NXE4 827 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 COL20A1Q9P218 1284 aa5.56□□□□□ -1.52
CSMD3-208ENST00000497026 FTSJ1Q9UET6 329 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms