RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 AEBP2Q6ZN18 517 aaPredicted RBP24.06■■□□□ 1.44
CSMD3-208ENST00000497026 CHIC1Q5VXU3 224 aa22.7■■□□□ 1.22
CSMD3-208ENST00000497026 SENP3Q9H4L4 574 aaPredicted RBP20.83■□□□□ 0.93
CSMD3-208ENST00000497026 PHF23Q9BUL5 403 aaPredicted RBP20.38■□□□□ 0.85
CSMD3-208ENST00000497026 FOXD1Q16676 465 aa19.35■□□□□ 0.69
CSMD3-208ENST00000497026 POTEDQ86YR6 584 aa18.96■□□□□ 0.63
CSMD3-208ENST00000497026 MSH5O43196 834 aa18.51■□□□□ 0.55
CSMD3-208ENST00000497026 PIAS4Q8N2W9 510 aaPredicted RBP17.98■□□□□ 0.47
CSMD3-208ENST00000497026 PLPPR3Q6T4P5 718 aa17.97■□□□□ 0.47
CSMD3-208ENST00000497026 PPP6R1Q9UPN7 881 aa17.55■□□□□ 0.4
CSMD3-208ENST00000497026 ADRA2BP18089 450 aa17.49■□□□□ 0.39
CSMD3-208ENST00000497026 DMRT2Q9Y5R5 561 aa16.37■□□□□ 0.21
CSMD3-208ENST00000497026 SCAF1Q9H7N4 1312 aaKnown RBP16.26■□□□□ 0.19
CSMD3-208ENST00000497026 MAPK8IP2Q13387 824 aaPredicted RBP16.22■□□□□ 0.19
CSMD3-208ENST00000497026 CACNB1Q02641 598 aaPredicted RBP16.19■□□□□ 0.18
CSMD3-208ENST00000497026 PPP4R3CPQ6ZMV5 832 aa15.85■□□□□ 0.13
CSMD3-208ENST00000497026 DCAF8L1A6NGE4 600 aa15.71■□□□□ 0.11
CSMD3-208ENST00000497026 RNF39Q9H2S5 420 aa15.65■□□□□ 0.1
CSMD3-208ENST00000497026 HOXD11P31277 338 aaPredicted RBP15.53■□□□□ 0.08
CSMD3-208ENST00000497026 C1QBPQ07021 282 aaKnown RBP15.48■□□□□ 0.07
CSMD3-208ENST00000497026 CNKSR2Q8WXI2 1034 aa15.42■□□□□ 0.06
CSMD3-208ENST00000497026 RNF216Q9NWF9 866 aaPredicted RBP15.29■□□□□ 0.04
CSMD3-208ENST00000497026 NCBP3Q53F19 620 aaKnown RBP15.27■□□□□ 0.04
CSMD3-208ENST00000497026 DNAJC5BQ9UF47 199 aa15.26■□□□□ 0.03
CSMD3-208ENST00000497026 KCNA4P22459 653 aa15.16■□□□□ 0.02
CSMD3-208ENST00000497026 NPM3O75607 178 aaKnown RBP15.12■□□□□ 0.01
CSMD3-208ENST00000497026 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.04
CSMD3-208ENST00000497026 POTEHQ6S545 545 aa14.77□□□□□ -0.04
CSMD3-208ENST00000497026 DSG3P32926 999 aa14.42□□□□□ -0.1
CSMD3-208ENST00000497026 CAPN15O75808 1086 aa14.4□□□□□ -0.1
CSMD3-208ENST00000497026 SLC4A2P04920 1241 aa14.36□□□□□ -0.11
CSMD3-208ENST00000497026 SLC4A1APQ9BWU0 796 aaKnown RBP14.35□□□□□ -0.11
CSMD3-208ENST00000497026 U3KPZ7 1027 aaPredicted RBP14.35□□□□□ -0.11
CSMD3-208ENST00000497026 SPINK5Q9NQ38 1064 aaPredicted RBP14.29□□□□□ -0.12
CSMD3-208ENST00000497026 APLP2Q06481 763 aa14.15□□□□□ -0.14
CSMD3-208ENST00000497026 ZNF219Q9P2Y4 722 aaPredicted RBP14.05□□□□□ -0.16
CSMD3-208ENST00000497026 TRHP20396 242 aaPredicted RBP13.99□□□□□ -0.17
CSMD3-208ENST00000497026 FOXD4L1Q9NU39 408 aa13.98□□□□□ -0.17
CSMD3-208ENST00000497026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.95□□□□□ -0.18
CSMD3-208ENST00000497026 ZBTB22O15209 634 aa13.95□□□□□ -0.18
CSMD3-208ENST00000497026 HNRNPUL2Q1KMD3 747 aaKnown RBP13.95□□□□□ -0.18
CSMD3-208ENST00000497026 RBM42Q9BTD8 480 aaKnown RBP13.93□□□□□ -0.18
CSMD3-208ENST00000497026 ABCB7O75027 752 aa13.92□□□□□ -0.18
CSMD3-208ENST00000497026 MYCNP04198 464 aaPredicted RBP13.92□□□□□ -0.18
CSMD3-208ENST00000497026 SAMD1Q6SPF0 538 aaPredicted RBP13.86□□□□□ -0.19
CSMD3-208ENST00000497026 CHRDL2Q6WN34 429 aa13.75□□□□□ -0.21
CSMD3-208ENST00000497026 ATF5Q9Y2D1 282 aaPredicted RBP13.69□□□□□ -0.22
CSMD3-208ENST00000497026 EHMT2Q96KQ7 1210 aa13.67□□□□□ -0.22
CSMD3-208ENST00000497026 SP7Q8TDD2 431 aaPredicted RBP13.58□□□□□ -0.24
CSMD3-208ENST00000497026 CSRNP3Q8WYN3 585 aa13.58□□□□□ -0.24
CSMD3-208ENST00000497026 POLA2Q14181 598 aa13.52□□□□□ -0.25
CSMD3-208ENST00000497026 ATXN8OSP0DMR3 200 aa13.44□□□□□ -0.26
CSMD3-208ENST00000497026 AKT1S1Q96B36 256 aa13.43□□□□□ -0.26
CSMD3-208ENST00000497026 ZBTB12Q9Y330 459 aaPredicted RBP13.33□□□□□ -0.28
CSMD3-208ENST00000497026 PIP4P2Q8N4L2 257 aa13.26□□□□□ -0.29
CSMD3-208ENST00000497026 HAX1O00165 279 aa13.24□□□□□ -0.29
CSMD3-208ENST00000497026 REM2Q8IYK8 340 aaPredicted RBP13.23□□□□□ -0.29
CSMD3-208ENST00000497026 FXR2P51116 673 aaKnown RBP eCLIP13.12□□□□□ -0.31
CSMD3-208ENST00000497026 OSCARQ8IYS5 282 aa13.1□□□□□ -0.31
CSMD3-208ENST00000497026 PITPNM1O00562 1244 aa13.06□□□□□ -0.32
CSMD3-208ENST00000497026 FBLN2P98095 1184 aa13.05□□□□□ -0.32
CSMD3-208ENST00000497026 MKRN4PQ13434 485 aaPredicted RBP13.04□□□□□ -0.32
CSMD3-208ENST00000497026 EVX2Q03828 476 aa12.87□□□□□ -0.35
CSMD3-208ENST00000497026 SPDYE2BA6NHP3 402 aa12.81□□□□□ -0.36
CSMD3-208ENST00000497026 SPDYE6P0CI01 402 aa12.81□□□□□ -0.36
CSMD3-208ENST00000497026 SPDYE2Q495Y8 402 aa12.81□□□□□ -0.36
CSMD3-208ENST00000497026 ZNF692Q9BU19 519 aaPredicted RBP12.79□□□□□ -0.36
CSMD3-208ENST00000497026 PRKAR2AP13861 404 aaKnown RBP12.76□□□□□ -0.37
CSMD3-208ENST00000497026 LHX8Q68G74 356 aa12.73□□□□□ -0.37
CSMD3-208ENST00000497026 C19orf67A6NJJ6 358 aa12.72□□□□□ -0.37
CSMD3-208ENST00000497026 SPDYE1Q8NFV5 336 aaPredicted RBP12.72□□□□□ -0.37
CSMD3-208ENST00000497026 SSUH2Q9Y2M2 353 aa12.69□□□□□ -0.38
CSMD3-208ENST00000497026 GABBR2O75899 941 aa12.67□□□□□ -0.38
CSMD3-208ENST00000497026 CLEC11AQ9Y240 323 aa12.66□□□□□ -0.38
CSMD3-208ENST00000497026 PABPN1Q86U42 306 aaKnown RBP eCLIP12.62□□□□□ -0.39
CSMD3-208ENST00000497026 SPDYE4A6NLX3 237 aa12.57□□□□□ -0.4
CSMD3-208ENST00000497026 CLCN6P51797 869 aa12.49□□□□□ -0.41
CSMD3-208ENST00000497026 PRR29P0C7W0 189 aa12.42□□□□□ -0.42
CSMD3-208ENST00000497026 CHADLQ6NUI6 762 aa12.4□□□□□ -0.42
CSMD3-208ENST00000497026 PLSCR2Q9NRY7 297 aa12.39□□□□□ -0.43
CSMD3-208ENST00000497026 FKBP8Q14318 412 aa12.33□□□□□ -0.44
CSMD3-208ENST00000497026 CD44P16070 742 aaKnown RBP12.32□□□□□ -0.44
CSMD3-208ENST00000497026 POTEIP0CG38 1075 aa12.3□□□□□ -0.44
CSMD3-208ENST00000497026 DCBLD2Q96PD2 775 aa12.28□□□□□ -0.44
CSMD3-208ENST00000497026 STAG3Q9UJ98 1225 aa12.25□□□□□ -0.45
CSMD3-208ENST00000497026 FARP1Q9Y4F1 1045 aaPredicted RBP12.25□□□□□ -0.45
CSMD3-208ENST00000497026 PROM2Q8N271 834 aa12.24□□□□□ -0.45
CSMD3-208ENST00000497026 CREBZFQ9NS37 354 aa12.15□□□□□ -0.46
CSMD3-208ENST00000497026 ZNF579Q8NAF0 562 aaKnown RBP12.12□□□□□ -0.47
CSMD3-208ENST00000497026 ZRANB1Q9UGI0 708 aa12.05□□□□□ -0.48
CSMD3-208ENST00000497026 PCDH10Q9P2E7 1040 aa12.03□□□□□ -0.48
CSMD3-208ENST00000497026 OTUD5Q96G74 571 aa12.02□□□□□ -0.49
CSMD3-208ENST00000497026 POTEMA6NI47 508 aa12□□□□□ -0.49
CSMD3-208ENST00000497026 MIER1Q8N108 512 aa11.98□□□□□ -0.49
CSMD3-208ENST00000497026 MNX1P50219 401 aaPredicted RBP11.95□□□□□ -0.5
CSMD3-208ENST00000497026 PAK3O75914 559 aaPredicted RBP11.94□□□□□ -0.5
CSMD3-208ENST00000497026 POTEGQ6S5H5 508 aa11.94□□□□□ -0.5
CSMD3-208ENST00000497026 GALR2O43603 387 aaPredicted RBP11.93□□□□□ -0.5
CSMD3-208ENST00000497026 PLCD3Q8N3E9 789 aa11.93□□□□□ -0.5
CSMD3-208ENST00000497026 NPM1P06748 294 aaKnown RBP eCLIP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 120.4 ms