RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeastyeast

Gene VAM3, Length 852 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM3YOR106W MATALPHA2P0CY08 210 aa0.79□□□□□ -2.28
VAM3YOR106W HMLALPHA2P0CY09 210 aa0.79□□□□□ -2.28
VAM3YOR106W NTG1P31378 399 aa0.79□□□□□ -2.28
VAM3YOR106W YBL010CP32788 280 aa0.79□□□□□ -2.28
VAM3YOR106W YCL012CQ8J0M4 134 aa0.79□□□□□ -2.28
VAM3YOR106W FMP23P38231 175 aa0.78□□□□□ -2.28
VAM3YOR106W MPM1P40364 252 aa0.78□□□□□ -2.28
VAM3YOR106W DCV1P43595 202 aa0.78□□□□□ -2.28
VAM3YOR106W RNH1Q04740 348 aa0.78□□□□□ -2.28
VAM3YOR106W DGK1Q12382 290 aa0.78□□□□□ -2.28
VAM3YOR106W ETR1P38071 380 aa0.77□□□□□ -2.29
VAM3YOR106W RPB4P20433 221 aaPredicted RBP0.76□□□□□ -2.29
VAM3YOR106W NSG1P38837 291 aa0.76□□□□□ -2.29
VAM3YOR106W NSA2P40078 261 aaKnown RBP0.76□□□□□ -2.29
VAM3YOR106W DAS2Q12084 232 aa0.76□□□□□ -2.29
VAM3YOR106W YMR030W-AQ3E760 96 aa0.76□□□□□ -2.29
VAM3YOR106W SBH1P52870 82 aa0.75□□□□□ -2.29
VAM3YOR106W RTC4P53850 401 aa0.75□□□□□ -2.29
VAM3YOR106W GRX5Q02784 150 aa0.75□□□□□ -2.29
VAM3YOR106W UPS1Q05776 175 aa0.75□□□□□ -2.29
VAM3YOR106W YLR412C-AQ3E742 68 aa0.75□□□□□ -2.29
VAM3YOR106W YPR014CQ6B0W2 109 aa0.75□□□□□ -2.29
VAM3YOR106W NSE4P43124 402 aa0.74□□□□□ -2.29
VAM3YOR106W NRK1P53915 240 aa0.74□□□□□ -2.29
VAM3YOR106W ARO80Q04052 950 aa0.74□□□□□ -2.29
VAM3YOR106W YHP1Q04116 353 aa0.74□□□□□ -2.29
VAM3YOR106W YOR342CQ12182 319 aa0.74□□□□□ -2.29
VAM3YOR106W ATP20Q12233 115 aa0.74□□□□□ -2.29
VAM3YOR106W QCR7P00128 127 aa0.73□□□□□ -2.29
VAM3YOR106W HHT1P61830 136 aa0.73□□□□□ -2.29
VAM3YOR106W ELP6Q04868 273 aa0.73□□□□□ -2.29
VAM3YOR106W YOL024WQ08172 172 aa0.73□□□□□ -2.29
VAM3YOR106W YJR015WP47090 510 aa0.72□□□□□ -2.29
VAM3YOR106W DML1Q03652 475 aa0.72□□□□□ -2.29
VAM3YOR106W RRT1P38192 103 aa0.71□□□□□ -2.3
VAM3YOR106W ATG41Q12048 136 aa0.71□□□□□ -2.3
VAM3YOR106W PRP8P33334 2413 aaKnown RBP0.71□□□□□ -2.3
VAM3YOR106W PGA1P53896 198 aa0.7□□□□□ -2.3
VAM3YOR106W YDL085C-AQ3E7B7 68 aaKnown RBP0.7□□□□□ -2.3
VAM3YOR106W MAK31P23059 88 aa0.69□□□□□ -2.3
VAM3YOR106W ADE1P27616 306 aa0.69□□□□□ -2.3
VAM3YOR106W JIP3O13555 125 aa0.68□□□□□ -2.3
VAM3YOR106W CCS1P40202 249 aaKnown RBP0.68□□□□□ -2.3
VAM3YOR106W AIM34Q03673 198 aa0.67□□□□□ -2.3
VAM3YOR106W TRX3P25372 127 aa0.66□□□□□ -2.3
VAM3YOR106W TAH1P25638 111 aaPredicted RBP0.66□□□□□ -2.3
VAM3YOR106W YKR070WP36151 352 aaKnown RBP0.66□□□□□ -2.3
VAM3YOR106W TIM11P81449 96 aaPredicted RBP0.66□□□□□ -2.3
VAM3YOR106W GAL83Q04739 417 aa0.66□□□□□ -2.3
VAM3YOR106W DUR1,2P32528 1835 aaKnown RBP0.66□□□□□ -2.3
VAM3YOR106W YKT6P36015 200 aaKnown RBP0.65□□□□□ -2.31
VAM3YOR106W TMA23Q03525 211 aa0.65□□□□□ -2.31
VAM3YOR106W YLR422WQ06409 1932 aa0.64□□□□□ -2.31
VAM3YOR106W HSP30P25619 332 aa0.64□□□□□ -2.31
VAM3YOR106W CAF4P36130 643 aa0.64□□□□□ -2.31
VAM3YOR106W YDC1Q02896 317 aa0.64□□□□□ -2.31
VAM3YOR106W NOC4Q06512 552 aaPredicted RBP0.64□□□□□ -2.31
VAM3YOR106W MPD1Q12404 318 aaKnown RBP0.64□□□□□ -2.31
VAM3YOR106W GCY1P14065 312 aaKnown RBP RIP-Chip data0.63□□□□□ -2.31not detected
VAM3YOR106W PRE1P22141 198 aaKnown RBP0.63□□□□□ -2.31
VAM3YOR106W VPS28Q02767 242 aa0.63□□□□□ -2.31
VAM3YOR106W KEI1Q06346 221 aa0.63□□□□□ -2.31
VAM3YOR106W YRA2P36036 203 aaKnown RBP RIP-Chip data0.62□□□□□ -2.31not detected
VAM3YOR106W SHB17P36136 271 aaKnown RBP0.62□□□□□ -2.31
VAM3YOR106W CGR1P53188 120 aa0.62□□□□□ -2.31
VAM3YOR106W SED1Q01589 338 aa0.61□□□□□ -2.31
VAM3YOR106W RIM9Q04734 239 aa0.61□□□□□ -2.31
VAM3YOR106W YOR381W-AQ3E804 55 aa0.61□□□□□ -2.31
VAM3YOR106W YCR001WP25347 104 aa0.6□□□□□ -2.31
VAM3YOR106W FMP32P43557 207 aa0.6□□□□□ -2.31
VAM3YOR106W YGL230CP53074 147 aa0.6□□□□□ -2.31
VAM3YOR106W SHH4Q06236 168 aa0.6□□□□□ -2.31
VAM3YOR106W MOB1P40484 314 aa0.59□□□□□ -2.31
VAM3YOR106W RAD9P14737 1309 aa0.59□□□□□ -2.32
VAM3YOR106W AHC2P25649 128 aa0.58□□□□□ -2.32
VAM3YOR106W YKR005CQ02203 525 aa0.58□□□□□ -2.32
VAM3YOR106W FCY1Q12178 158 aa0.58□□□□□ -2.32
VAM3YOR106W YOL013W-AP0C272 63 aaPredicted RBP0.57□□□□□ -2.32
VAM3YOR106W YNL200CP40165 246 aaKnown RBP0.57□□□□□ -2.32
VAM3YOR106W AVO2Q04749 426 aa0.57□□□□□ -2.32
VAM3YOR106W YHR213W-BQ8TGK1 99 aa0.57□□□□□ -2.32
VAM3YOR106W CLG1P35190 452 aa0.56□□□□□ -2.32
VAM3YOR106W FYV4P38783 130 aaPredicted RBP0.56□□□□□ -2.32
VAM3YOR106W RFC2P40348 353 aa0.56□□□□□ -2.32
VAM3YOR106W POG1P40473 351 aa0.56□□□□□ -2.32
VAM3YOR106W GRX8Q05926 109 aa0.56□□□□□ -2.32
VAM3YOR106W YOR214CQ12282 236 aa0.56□□□□□ -2.32
VAM3YOR106W YKL102CP34249 101 aa0.55□□□□□ -2.32
VAM3YOR106W BRX1Q08235 291 aaKnown RBP0.55□□□□□ -2.32
VAM3YOR106W YDL157CQ12082 118 aa0.55□□□□□ -2.32
VAM3YOR106W SEC14P24280 304 aaKnown RBP0.54□□□□□ -2.32
VAM3YOR106W GPI17Q04080 534 aa0.54□□□□□ -2.32
VAM3YOR106W YPR127WQ06494 345 aa0.54□□□□□ -2.32
VAM3YOR106W TIM13P53299 105 aa0.53□□□□□ -2.32
VAM3YOR106W YML079WQ03629 201 aa0.53□□□□□ -2.32
VAM3YOR106W HRD1Q08109 551 aa0.53□□□□□ -2.32
VAM3YOR106W RIF1P29539 1916 aa0.52□□□□□ -2.33
VAM3YOR106W CPR5P35176 225 aa0.52□□□□□ -2.33
VAM3YOR106W SHG1P38337 142 aa0.52□□□□□ -2.33
VAM3YOR106W CIN5P40917 295 aa0.52□□□□□ -2.33
Retrieved 100 of 5,963 RNA–protein pairs in 39.8 ms