RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W YOR283WQ12040 230 aaKnown RBP3.77□□□□□ -1.81
PRP40YKL012W FKS1P38631 1876 aaKnown RBP3.77□□□□□ -1.81
PRP40YKL012W YET1P35723 206 aa3.76□□□□□ -1.81
PRP40YKL012W MRPL17P36528 281 aa3.76□□□□□ -1.81
PRP40YKL012W COS6P53344 381 aa3.76□□□□□ -1.81
PRP40YKL012W HNT1Q04344 158 aaKnown RBP3.76□□□□□ -1.81
PRP40YKL012W SPG3Q04398 127 aaPredicted RBP3.76□□□□□ -1.81
PRP40YKL012W NEJ1Q06148 342 aa3.76□□□□□ -1.81
PRP40YKL012W SUE1Q06524 206 aa3.76□□□□□ -1.81
PRP40YKL012W TIM9O74700 87 aa3.76□□□□□ -1.81
PRP40YKL012W NOP1P15646 327 aaKnown RBP3.76□□□□□ -1.81
PRP40YKL012W CKS1P20486 150 aaKnown RBP3.76□□□□□ -1.81
PRP40YKL012W ATP15P21306 62 aa3.76□□□□□ -1.81
PRP40YKL012W MAK31P23059 88 aa3.76□□□□□ -1.81
PRP40YKL012W ARO7P32178 256 aa3.76□□□□□ -1.81
PRP40YKL012W YER076CP40049 302 aa3.76□□□□□ -1.81
PRP40YKL012W SKI6P46948 246 aaPredicted RBP3.76□□□□□ -1.81
PRP40YKL012W ARO8P53090 500 aaKnown RBP3.76□□□□□ -1.81
PRP40YKL012W YLR031WQ07978 186 aa3.76□□□□□ -1.81
PRP40YKL012W YHR180WP38868 163 aa3.75□□□□□ -1.81
PRP40YKL012W MEI4P29467 408 aa3.74□□□□□ -1.81
PRP40YKL012W CLB6P32943 380 aa3.74□□□□□ -1.81
PRP40YKL012W NVJ1P38881 321 aa3.74□□□□□ -1.81
PRP40YKL012W LSM4P40070 187 aaKnown RBP3.74□□□□□ -1.81
PRP40YKL012W YKE4P40544 346 aa3.74□□□□□ -1.81
PRP40YKL012W HRT1Q08273 121 aa3.74□□□□□ -1.81
PRP40YKL012W YLR050CQ12155 161 aaKnown RBP3.74□□□□□ -1.81
PRP40YKL012W AHC2P25649 128 aa3.74□□□□□ -1.81
PRP40YKL012W FMP23P38231 175 aa3.74□□□□□ -1.81
PRP40YKL012W PGD1P40356 397 aa3.74□□□□□ -1.81
PRP40YKL012W GVP36P40531 326 aaKnown RBP3.74□□□□□ -1.81
PRP40YKL012W AIM34Q03673 198 aa3.74□□□□□ -1.81
PRP40YKL012W SPC24Q04477 213 aa3.74□□□□□ -1.81
PRP40YKL012W DGA1Q08650 418 aa3.74□□□□□ -1.81
PRP40YKL012W AME1P38313 324 aa3.73□□□□□ -1.81
PRP40YKL012W YFH7P43591 353 aa3.73□□□□□ -1.81
PRP40YKL012W ATO3Q12359 275 aa3.73□□□□□ -1.81
PRP40YKL012W QCR2P07257 368 aa3.72□□□□□ -1.81
PRP40YKL012W OCH1P31755 480 aa3.72□□□□□ -1.81
PRP40YKL012W TMA22P47089 198 aaPredicted RBP3.72□□□□□ -1.81
PRP40YKL012W YJR111CP47148 283 aaKnown RBP3.72□□□□□ -1.81
PRP40YKL012W YGR219WP53307 113 aa3.72□□□□□ -1.81
PRP40YKL012W SHH4Q06236 168 aa3.72□□□□□ -1.81
PRP40YKL012W OCA6Q12454 224 aa3.72□□□□□ -1.81
PRP40YKL012W RPC19P28000 142 aaKnown RBP3.71□□□□□ -1.82
PRP40YKL012W MDH3P32419 343 aaKnown RBP RIP-Chip data3.71□□□□□ -1.82not detected
PRP40YKL012W UMP1P38293 148 aa3.71□□□□□ -1.82
PRP40YKL012W AIM2P39721 246 aa3.71□□□□□ -1.82
PRP40YKL012W PGA1P53896 198 aa3.71□□□□□ -1.82
PRP40YKL012W UBC6P33296 250 aaPredicted RBP3.7□□□□□ -1.82
PRP40YKL012W SRL3P36167 246 aa3.7□□□□□ -1.82
PRP40YKL012W ORM1P53224 222 aa3.7□□□□□ -1.82
PRP40YKL012W YDR274CP87283 123 aa3.7□□□□□ -1.82
PRP40YKL012W HPT1Q04178 221 aaKnown RBP3.7□□□□□ -1.82
PRP40YKL012W RBL2P48606 106 aaKnown RBP3.69□□□□□ -1.82
PRP40YKL012W MIX17Q03667 156 aa3.69□□□□□ -1.82
PRP40YKL012W MPD1Q12404 318 aaKnown RBP3.69□□□□□ -1.82
PRP40YKL012W EMC6Q12431 108 aa3.69□□□□□ -1.82
PRP40YKL012W PEX11Q12462 236 aa3.69□□□□□ -1.82
PRP40YKL012W FAB1P34756 2278 aa3.69□□□□□ -1.82
PRP40YKL012W SNC2P33328 115 aa3.68□□□□□ -1.82
PRP40YKL012W SER2P42941 309 aa3.68□□□□□ -1.82
PRP40YKL012W CIS3P47001 227 aa3.68□□□□□ -1.82
PRP40YKL012W TDA4P47153 279 aa3.68□□□□□ -1.82
PRP40YKL012W DOC1P53068 250 aa3.68□□□□□ -1.82
PRP40YKL012W NUP49Q02199 472 aa3.68□□□□□ -1.82
PRP40YKL012W GPI17Q04080 534 aa3.68□□□□□ -1.82
PRP40YKL012W YNR062CP53748 327 aa3.68□□□□□ -1.82
PRP40YKL012W YKR005CQ02203 525 aa3.68□□□□□ -1.82
PRP40YKL012W MRPS8Q03799 155 aa3.68□□□□□ -1.82
PRP40YKL012W YPR014CQ6B0W2 109 aa3.68□□□□□ -1.82
PRP40YKL012W ODC2Q99297 307 aa3.68□□□□□ -1.82
PRP40YKL012W YKL102CP34249 101 aa3.67□□□□□ -1.82
PRP40YKL012W YEA4P40004 342 aa3.67□□□□□ -1.82
PRP40YKL012W SMX2P40204 77 aaKnown RBP3.67□□□□□ -1.82
PRP40YKL012W RPL33BP41056 107 aaKnown RBP3.67□□□□□ -1.82
PRP40YKL012W PLP1Q04004 230 aa3.67□□□□□ -1.82
PRP40YKL012W YOR062CP36025 268 aa3.66□□□□□ -1.82
PRP40YKL012W DAS2Q12084 232 aa3.66□□□□□ -1.82
PRP40YKL012W TVP38P36164 337 aa3.66□□□□□ -1.82
PRP40YKL012W ERV15P38312 142 aa3.66□□□□□ -1.82
PRP40YKL012W YBR285WP38354 144 aa3.66□□□□□ -1.82
PRP40YKL012W GAA1P39012 614 aa3.66□□□□□ -1.82
PRP40YKL012W DYN3Q04949 312 aa3.66□□□□□ -1.82
PRP40YKL012W YDR278CQ05612 105 aa3.66□□□□□ -1.82
PRP40YKL012W MEU1Q07938 337 aaKnown RBP RIP-Chip data3.66□□□□□ -1.82not detected
PRP40YKL012W CMD1P06787 147 aaKnown RBP3.65□□□□□ -1.83
PRP40YKL012W YOL014WQ08110 124 aa3.65□□□□□ -1.83
PRP40YKL012W FSF1Q12029 327 aaKnown RBP3.65□□□□□ -1.83
PRP40YKL012W YML100W-AQ8TGT0 57 aa3.65□□□□□ -1.83
PRP40YKL012W PEX4P29340 183 aa3.64□□□□□ -1.83
PRP40YKL012W UTR5P32630 166 aa3.64□□□□□ -1.83
PRP40YKL012W KDX1P36005 433 aa3.64□□□□□ -1.83
PRP40YKL012W MTW1P39731 289 aa3.64□□□□□ -1.83
PRP40YKL012W YER134CP40081 178 aa3.64□□□□□ -1.83
PRP40YKL012W EAF6P47128 113 aa3.64□□□□□ -1.83
PRP40YKL012W YLR053CQ12026 108 aa3.64□□□□□ -1.83
PRP40YKL012W PAN3P36102 679 aaPredicted RBP3.63□□□□□ -1.83
PRP40YKL012W PHO88P38264 188 aaPredicted RBP3.63□□□□□ -1.83
PRP40YKL012W TIR3P40552 269 aa3.63□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 24.9 ms