RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC9	YGR009C	HRT1	Q08273	121 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	TIR4	Q12218	487 aa	Predicted RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	YOR097C	Q12274	175 aa	Predicted RBP	4.2	□□□□□ -1.74
SEC9	YGR009C	YPR145C-A	Q2V2P0	78 aa		4.2	□□□□□ -1.74
SEC9	YGR009C	USO1	P25386	1790 aa		4.19	□□□□□ -1.74
SEC9	YGR009C	CPA1	P07258	411 aa	Known RBP	4.19	□□□□□ -1.74
SEC9	YGR009C	AQY1	P0CD91	305 aa		4.19	□□□□□ -1.74
SEC9	YGR009C	GAS1	P22146	559 aa	Known RBP	4.19	□□□□□ -1.74
SEC9	YGR009C	SDS24	P38314	527 aa		4.19	□□□□□ -1.74
SEC9	YGR009C	ATG12	P38316	186 aa		4.19	□□□□□ -1.74
SEC9	YGR009C	YAR029W	P39549	74 aa		4.19	□□□□□ -1.74
SEC9	YGR009C	CWP2	P43497	92 aa		4.19	□□□□□ -1.74
SEC9	YGR009C	TOS2	P50078	622 aa		4.19	□□□□□ -1.74
SEC9	YGR009C	ERG26	P53199	349 aa	Known RBP	4.19	□□□□□ -1.74
SEC9	YGR009C	ESP1	Q03018	1630 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	POP8	P38208	133 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	YIA6	P40556	373 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	CUP9	P41817	306 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	SMD3	P43321	101 aa	Known RBP	4.18	□□□□□ -1.74
SEC9	YGR009C	PGA1	P53896	198 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	ARR3	Q06598	404 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	PAU23	Q07987	124 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	PAU17	Q12370	124 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	MPD1	Q12404	318 aa	Known RBP	4.18	□□□□□ -1.74
SEC9	YGR009C	YPL119C-A	Q3E751	87 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	ECM12	O13529	151 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	MIG1	P27705	504 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	YSC84	P32793	468 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	RPL32	P38061	130 aa	Known RBP	4.18	□□□□□ -1.74
SEC9	YGR009C	MSL1	P40567	111 aa	Predicted RBP	4.18	□□□□□ -1.74
SEC9	YGR009C	SWS2	P53937	143 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	YPL039W	Q03080	316 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	GAS3	Q03655	524 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	YMR082C	Q04276	118 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	PRM3	Q08931	133 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	SLM3	Q12093	417 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	NCE102	Q12207	173 aa	RIP-Chip data	4.18	□□□□□ -1.74	not detected
SEC9	YGR009C	YDL180W	Q12301	547 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	Q0010	Q9ZZX9	128 aa		4.18	□□□□□ -1.74
SEC9	YGR009C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
SEC9	YGR009C	UTR5	P32630	166 aa		4.17	□□□□□ -1.74
SEC9	YGR009C	ALK2	P32789	676 aa	Predicted RBP	4.17	□□□□□ -1.74
SEC9	YGR009C	GEP4	P38812	185 aa		4.17	□□□□□ -1.74
SEC9	YGR009C	VMA21	P41806	77 aa		4.17	□□□□□ -1.74
SEC9	YGR009C	GPI2	P46961	280 aa		4.17	□□□□□ -1.74
SEC9	YGR009C	SCW4	P53334	386 aa	Known RBP	4.17	□□□□□ -1.74
SEC9	YGR009C	LSM7	P53905	115 aa	Known RBP	4.17	□□□□□ -1.74
SEC9	YGR009C	YPL062W	Q02781	134 aa		4.17	□□□□□ -1.74
SEC9	YGR009C	ASM4	Q05166	528 aa		4.17	□□□□□ -1.74
SEC9	YGR009C	RRG7	Q08774	242 aa	Predicted RBP	4.17	□□□□□ -1.74
SEC9	YGR009C	EAF3	Q12432	401 aa		4.17	□□□□□ -1.74
SEC9	YGR009C	MBF1	O14467	151 aa	Known RBP	4.16	□□□□□ -1.74
SEC9	YGR009C	HEM2	P05373	342 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	YGL010W	P25338	174 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	MRP21	P38175	177 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	CSH1	P38287	376 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	ARN2	P38724	620 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	OST1	P41543	476 aa	Known RBP	4.16	□□□□□ -1.74
SEC9	YGR009C	FIP1	P45976	327 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	EAF6	P47128	113 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	UBC13	P52490	153 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	SPR6	Q01684	191 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	NUP100	Q02629	959 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	FIT1	Q04433	528 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	PIN3	Q06449	215 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	YPR174C	Q06616	221 aa	Predicted RBP	4.16	□□□□□ -1.74
SEC9	YGR009C	YDR215C	Q12240	137 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	VMA9	Q3E7B6	73 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	RPS25B	P0C0T4	108 aa	Known RBP	4.16	□□□□□ -1.74
SEC9	YGR009C	GLC7	P32598	312 aa	Known RBP	4.16	□□□□□ -1.74
SEC9	YGR009C	DSS4	P32601	143 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	SPT4	P32914	102 aa	Predicted RBP	4.16	□□□□□ -1.74
SEC9	YGR009C	APS1	P35181	156 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	NNK1	P36003	928 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
SEC9	YGR009C	MCR1	P36060	302 aa	Known RBP	4.16	□□□□□ -1.74
SEC9	YGR009C	YNL195C	P40168	261 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	BUD25	P85052	153 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	GRX5	Q02784	150 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	SNX3	Q08826	162 aa	Known RBP	4.16	□□□□□ -1.74
SEC9	YGR009C	YPL264C	Q08980	353 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	RPS25A	Q3E792	108 aa	Predicted RBP	4.16	□□□□□ -1.74
SEC9	YGR009C	MED11	Q99278	115 aa		4.16	□□□□□ -1.74
SEC9	YGR009C	RPL16B	P26785	198 aa	Known RBP	4.15	□□□□□ -1.74
SEC9	YGR009C	YER134C	P40081	178 aa		4.15	□□□□□ -1.74
SEC9	YGR009C	KEG1	P43614	200 aa		4.15	□□□□□ -1.74
SEC9	YGR009C	MTR3	P48240	250 aa	Predicted RBP	4.15	□□□□□ -1.74
SEC9	YGR009C	YPS5	P53057	165 aa		4.15	□□□□□ -1.74
SEC9	YGR009C	YGR164W	P53291	111 aa		4.15	□□□□□ -1.74
SEC9	YGR009C	RAF1	Q06891	181 aa		4.15	□□□□□ -1.74
SEC9	YGR009C	TRP1	P00912	224 aa		4.14	□□□□□ -1.75
SEC9	YGR009C	RAS2	P01120	322 aa	Known RBP	4.14	□□□□□ -1.75
SEC9	YGR009C	YER181C	P40097	107 aa		4.14	□□□□□ -1.75
SEC9	YGR009C	CYB5	P40312	120 aa		4.14	□□□□□ -1.75
SEC9	YGR009C	FLX1	P40464	311 aa		4.14	□□□□□ -1.75
SEC9	YGR009C	YJL213W	P40896	331 aa		4.14	□□□□□ -1.75
SEC9	YGR009C	RNH201	P53942	307 aa		4.14	□□□□□ -1.75
SEC9	YGR009C	YMR090W	Q04304	227 aa	Known RBP	4.14	□□□□□ -1.75
SEC9	YGR009C	SPG4	Q04438	115 aa		4.14	□□□□□ -1.75
SEC9	YGR009C	YLR012C	Q07927	99 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 662.4 ms