RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeast

Gene NME1, Length 340 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NME1	NME1	RPL2B	P0CX46	254 aa	Known RBP	4.31	□□□□□ -1.72
NME1	NME1	YER121W	P40076	114 aa		4.31	□□□□□ -1.72
NME1	NME1	DAD4	P69851	72 aa		4.3	□□□□□ -1.72
NME1	NME1	RNH202	Q05635	350 aa		4.3	□□□□□ -1.72
NME1	NME1	MDM35	O60200	86 aa		4.29	□□□□□ -1.72
NME1	NME1	FPR1	P20081	114 aa	Known RBP	4.29	□□□□□ -1.72
NME1	NME1	FYV12	Q08559	129 aa		4.29	□□□□□ -1.72
NME1	NME1	STP22	P25604	385 aa		4.28	□□□□□ -1.72
NME1	NME1	RME1	P32338	300 aa	Known RBP	4.28	□□□□□ -1.72
NME1	NME1	TTI2	P47168	421 aa		4.28	□□□□□ -1.72
NME1	NME1	ATP20	Q12233	115 aa		4.28	□□□□□ -1.72
NME1	NME1	FES1	P38260	290 aa		4.27	□□□□□ -1.73
NME1	NME1	YHL018W	P38744	120 aa	Predicted RBP	4.27	□□□□□ -1.73
NME1	NME1	XPT1	P47165	209 aa		4.27	□□□□□ -1.73
NME1	NME1	SOL1	P50278	321 aa		4.27	□□□□□ -1.73
NME1	NME1	MPA43	P53583	542 aa	Predicted RBP	4.26	□□□□□ -1.73
NME1	NME1	GAL83	Q04739	417 aa		4.26	□□□□□ -1.73
NME1	NME1	DAS2	Q12084	232 aa		4.26	□□□□□ -1.73
NME1	NME1	SFK1	P35735	353 aa		4.25	□□□□□ -1.73
NME1	NME1	MZM1	Q03429	123 aa	Predicted RBP	4.25	□□□□□ -1.73
NME1	NME1	BEM2	P39960	2167 aa	Known RBP	4.24	□□□□□ -1.73
NME1	NME1	COX8	P04039	78 aa		4.24	□□□□□ -1.73
NME1	NME1	QCR2	P07257	368 aa		4.24	□□□□□ -1.73
NME1	NME1	GSP2	P32836	220 aa	Known RBP	4.24	□□□□□ -1.73
NME1	NME1	TIM13	P53299	105 aa		4.24	□□□□□ -1.73
NME1	NME1	VPS28	Q02767	242 aa		4.24	□□□□□ -1.73
NME1	NME1	YPR127W	Q06494	345 aa		4.24	□□□□□ -1.73
NME1	NME1	YOR214C	Q12282	236 aa		4.24	□□□□□ -1.73
NME1	NME1	THG1	P53215	237 aa	Known RBP	4.22	□□□□□ -1.73
NME1	NME1	HSK3	P69852	69 aa		4.22	□□□□□ -1.73
NME1	NME1	GRX5	Q02784	150 aa		4.22	□□□□□ -1.73
NME1	NME1	YNL146C-A	Q3E7Z1	64 aa		4.22	□□□□□ -1.73
NME1	NME1	RRT1	P38192	103 aa		4.21	□□□□□ -1.74
NME1	NME1	TMA20	P89886	181 aa	Predicted RBP	4.21	□□□□□ -1.74
NME1	NME1	RCE1	Q03530	315 aa		4.21	□□□□□ -1.74
NME1	NME1	YLR053C	Q12026	108 aa		4.21	□□□□□ -1.74
NME1	NME1	HSP30	P25619	332 aa		4.2	□□□□□ -1.74
NME1	NME1	FIT2	Q08906	153 aa		4.2	□□□□□ -1.74
NME1	NME1	MSB2	P32334	1306 aa		4.2	□□□□□ -1.74
NME1	NME1	FYV4	P38783	130 aa	Predicted RBP	4.19	□□□□□ -1.74
NME1	NME1	YNL200C	P40165	246 aa	Known RBP	4.19	□□□□□ -1.74
NME1	NME1	FLX1	P40464	311 aa		4.19	□□□□□ -1.74
NME1	NME1	YKR005C	Q02203	525 aa		4.19	□□□□□ -1.74
NME1	NME1	PIR1	Q03178	341 aa		4.19	□□□□□ -1.74
NME1	NME1	YOR015W	Q12169	119 aa		4.19	□□□□□ -1.74
NME1	NME1	AME1	P38313	324 aa		4.18	□□□□□ -1.74
NME1	NME1	NUF2	P33895	451 aa		4.17	□□□□□ -1.74
NME1	NME1	CPR5	P35176	225 aa		4.17	□□□□□ -1.74
NME1	NME1	YAE1	P47118	141 aa	Predicted RBP	4.17	□□□□□ -1.74
NME1	NME1	MAK3	Q03503	176 aa		4.17	□□□□□ -1.74
NME1	NME1	RDI1	Q12434	202 aa		4.17	□□□□□ -1.74
NME1	NME1	YCR023C	P25351	611 aa		4.16	□□□□□ -1.74
NME1	NME1	THI74	Q04083	370 aa		4.16	□□□□□ -1.74
NME1	NME1	RIO2	P40160	425 aa	Known RBP	4.15	□□□□□ -1.75
NME1	NME1	HYR1	P40581	163 aa	Known RBP	4.15	□□□□□ -1.75
NME1	NME1	GLR1	P41921	483 aa	Known RBP	4.15	□□□□□ -1.75
NME1	NME1	ALB1	P47019	175 aa	Predicted RBP	4.15	□□□□□ -1.75
NME1	NME1	CWC27	Q02770	301 aa		4.15	□□□□□ -1.75
NME1	NME1	CSH1	P38287	376 aa		4.14	□□□□□ -1.75
NME1	NME1	CYR1	P08678	2026 aa	Known RBP	4.14	□□□□□ -1.75
NME1	NME1	HPA3	P39979	161 aa		4.13	□□□□□ -1.75
NME1	NME1	EDC3	P39998	551 aa	Known RBP	4.13	□□□□□ -1.75
NME1	NME1	SMD2	Q06217	110 aa	Known RBP	4.13	□□□□□ -1.75
NME1	NME1	ARC19	P33204	171 aa	Known RBP	4.12	□□□□□ -1.75
NME1	NME1	YFH7	P43591	353 aa		4.12	□□□□□ -1.75
NME1	NME1	UBC7	Q02159	165 aa		4.12	□□□□□ -1.75
NME1	NME1	RRP17	Q04031	235 aa	Predicted RBP	4.12	□□□□□ -1.75
NME1	NME1	RAD6	P06104	172 aa		4.11	□□□□□ -1.75
NME1	NME1	YGL235W	P53071	178 aa		4.11	□□□□□ -1.75
NME1	NME1	UBR2	Q07963	1872 aa		4.11	□□□□□ -1.75
NME1	NME1	FAS1	P07149	2051 aa	Known RBP	4.1	□□□□□ -1.75
NME1	NME1	RPB7	P34087	171 aa		4.1	□□□□□ -1.75
NME1	NME1	YGL101W	P53144	215 aa		4.1	□□□□□ -1.75
NME1	NME1	YDR476C	Q03362	224 aa		4.1	□□□□□ -1.75
NME1	NME1	DML1	Q03652	475 aa		4.1	□□□□□ -1.75
NME1	NME1	QCR6	P00127	147 aa		4.08	□□□□□ -1.76
NME1	NME1	UPS3	Q04006	179 aa		4.08	□□□□□ -1.76
NME1	NME1	TRM3	Q07527	1436 aa		4.08	□□□□□ -1.76
NME1	NME1	PST2	Q12335	198 aa	Known RBP	4.08	□□□□□ -1.76
NME1	NME1	YOR381W-A	Q3E804	55 aa		4.08	□□□□□ -1.76
NME1	NME1	RPS28B	P0C0X0	67 aa	Known RBP	4.07	□□□□□ -1.76
NME1	NME1	NSE4	P43124	402 aa		4.07	□□□□□ -1.76
NME1	NME1	UPS1	Q05776	175 aa		4.07	□□□□□ -1.76
NME1	NME1	RPS28A	Q3E7X9	67 aa	Predicted RBP	4.07	□□□□□ -1.76
NME1	NME1	STF2	P16965	84 aa		4.06	□□□□□ -1.76
NME1	NME1	YHL042W	P38729	150 aa		4.06	□□□□□ -1.76
NME1	NME1	ATG41	Q12048	136 aa		4.06	□□□□□ -1.76
NME1	NME1	YHP1	Q04116	353 aa		4.05	□□□□□ -1.76
NME1	NME1	RIM9	Q04734	239 aa		4.05	□□□□□ -1.76
NME1	NME1	NSL1	Q12143	216 aa		4.05	□□□□□ -1.76
NME1	NME1	YMR252C	Q04814	134 aa		4.04	□□□□□ -1.76
NME1	NME1	SYM1	Q06563	197 aa		4.04	□□□□□ -1.76
NME1	NME1	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
NME1	NME1	DER1	P38307	211 aa		4.03	□□□□□ -1.76
NME1	NME1	YEL073C	P39974	107 aa		4.02	□□□□□ -1.77
NME1	NME1	YEL028W	P39989	153 aa		4.02	□□□□□ -1.77
NME1	NME1	LSM3	P57743	89 aa	Known RBP	4.02	□□□□□ -1.77
NME1	NME1	YLR422W	Q06409	1932 aa		4.01	□□□□□ -1.77
NME1	NME1	UBI4	P0CG63	381 aa	Known RBP	4	□□□□□ -1.77
NME1	NME1	SOK1	P40317	901 aa		4	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms