RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	ATS1	P31386	333 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	SRP21	P32342	167 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	UTP30	P36144	274 aa	Known RBP	4.82	□□□□□ -1.64
TFB4	YPR056W	AVT2	P39981	480 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	IRC22	P40006	225 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	YER189W	P40104	122 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	RIO2	P40160	425 aa	Known RBP	4.82	□□□□□ -1.64
TFB4	YPR056W	YIL152W	P40455	235 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	DIM1	P41819	318 aa	Known RBP	4.82	□□□□□ -1.64
TFB4	YPR056W	GPI2	P46961	280 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	YGL262W	P53054	175 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	APJ1	P53940	528 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	EMI1	Q04406	187 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	FMP42	Q04991	504 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	AYT1	Q12226	474 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	YPS3	Q12303	508 aa		4.82	□□□□□ -1.64
TFB4	YPR056W	YER039C-A	P0CD97	72 aa		4.81	□□□□□ -1.64
TFB4	YPR056W	CPR1	P14832	162 aa	Known RBP	4.81	□□□□□ -1.64
TFB4	YPR056W	PTC1	P35182	281 aa		4.81	□□□□□ -1.64
TFB4	YPR056W	SHE1	P38200	338 aa		4.81	□□□□□ -1.64
TFB4	YPR056W	YHR140W	P38842	239 aa		4.81	□□□□□ -1.64
TFB4	YPR056W	TIF34	P40217	347 aa	Known RBP	4.81	□□□□□ -1.64
TFB4	YPR056W	SFT1	P43682	97 aa		4.81	□□□□□ -1.64
TFB4	YPR056W	SKI6	P46948	246 aa	Predicted RBP	4.81	□□□□□ -1.64
TFB4	YPR056W	SWT21	P53873	357 aa	Predicted RBP	4.81	□□□□□ -1.64
TFB4	YPR056W	TIM22	Q12328	207 aa		4.81	□□□□□ -1.64
TFB4	YPR056W	REV3	P14284	1504 aa		4.81	□□□□□ -1.64
TFB4	YPR056W	ATP5	P09457	212 aa		4.8	□□□□□ -1.64
TFB4	YPR056W	YPR170W-B	P0C5R9	85 aa		4.8	□□□□□ -1.64
TFB4	YPR056W	YBL081W	P38180	368 aa	Known RBP	4.8	□□□□□ -1.64
TFB4	YPR056W	AVT6	P40074	448 aa		4.8	□□□□□ -1.64
TFB4	YPR056W	MOB1	P40484	314 aa		4.8	□□□□□ -1.64
TFB4	YPR056W	STB1	P42845	420 aa		4.8	□□□□□ -1.64
TFB4	YPR056W	NIP7	Q08962	181 aa	Known RBP	4.8	□□□□□ -1.64
TFB4	YPR056W	FCF2	Q12035	217 aa	Predicted RBP	4.8	□□□□□ -1.64
TFB4	YPR056W	YOR020W-A	Q3E824	90 aa		4.8	□□□□□ -1.64
TFB4	YPR056W	NAG1	Q8TGN9	163 aa		4.8	□□□□□ -1.64
TFB4	YPR056W	RPB5	P20434	215 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	SPT14	P32363	452 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	FMP46	P36141	133 aa	Known RBP	4.79	□□□□□ -1.64
TFB4	YPR056W	OM14	P38325	134 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	AIM18	P38884	321 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	AIM2	P39721	246 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	YER181C	P40097	107 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	YFL067W	P43537	175 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	RPE1	P46969	238 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	YJL028W	P47062	111 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	TDA4	P47153	279 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	BNS1	P50084	137 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	CRH1	P53301	507 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	YNL033W	P53964	284 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	YNL019C	P53975	284 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	VPS28	Q02767	242 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	YDL211C	Q12121	372 aa		4.79	□□□□□ -1.64
TFB4	YPR056W	MSA2	P36157	363 aa		4.78	□□□□□ -1.64
TFB4	YPR056W	NSG1	P38837	291 aa		4.78	□□□□□ -1.64
TFB4	YPR056W	PRE5	P40302	234 aa	Known RBP	4.78	□□□□□ -1.64
TFB4	YPR056W	MYO2	P19524	1574 aa	Known RBP	4.78	□□□□□ -1.64
TFB4	YPR056W	VAR1	P02381	398 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	CCA1	P21269	546 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	ZRT3	P34240	503 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	SKG1	P36169	355 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	MRPL15	P36523	253 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	RPF1	P38805	295 aa	Known RBP	4.77	□□□□□ -1.65
TFB4	YPR056W	GVP36	P40531	326 aa	Known RBP	4.77	□□□□□ -1.65
TFB4	YPR056W	RPR2	P40571	144 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	ATG18	P43601	500 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	WSC2	P53832	503 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	SCW10	Q04951	389 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	YPL264C	Q08980	353 aa		4.77	□□□□□ -1.65
TFB4	YPR056W	RPL21B	Q12672	160 aa	Known RBP	4.77	□□□□□ -1.65
TFB4	YPR056W	YLR462W	O13556	202 aa		4.76	□□□□□ -1.65
TFB4	YPR056W	RPB3	P16370	318 aa	Known RBP	4.76	□□□□□ -1.65
TFB4	YPR056W	YKR070W	P36151	352 aa	Known RBP	4.76	□□□□□ -1.65
TFB4	YPR056W	YEL075C	P39972	122 aa		4.76	□□□□□ -1.65
TFB4	YPR056W	PGU1	P47180	361 aa		4.76	□□□□□ -1.65
TFB4	YPR056W	YGL193C	P53097	103 aa		4.76	□□□□□ -1.65
TFB4	YPR056W	YPL039W	Q03080	316 aa		4.76	□□□□□ -1.65
TFB4	YPR056W	YOL014W	Q08110	124 aa		4.76	□□□□□ -1.65
TFB4	YPR056W	SLD7	Q08457	257 aa		4.76	□□□□□ -1.65
TFB4	YPR056W	NDD1	Q08887	554 aa		4.76	□□□□□ -1.65
TFB4	YPR056W	SPS2	P08459	502 aa		4.75	□□□□□ -1.65
TFB4	YPR056W	SEC59	P20048	519 aa		4.75	□□□□□ -1.65
TFB4	YPR056W	BET1	P22804	142 aa		4.75	□□□□□ -1.65
TFB4	YPR056W	SHB17	P36136	271 aa	Known RBP	4.75	□□□□□ -1.65
TFB4	YPR056W	YJL218W	P40892	196 aa	Known RBP	4.75	□□□□□ -1.65
TFB4	YPR056W	BUD25	P85052	153 aa		4.75	□□□□□ -1.65
TFB4	YPR056W	YLR412C-A	Q3E742	68 aa		4.75	□□□□□ -1.65
TFB4	YPR056W	KTI11	Q3E840	82 aa		4.75	□□□□□ -1.65
TFB4	YPR056W	YML100W-A	Q8TGT0	57 aa		4.75	□□□□□ -1.65
TFB4	YPR056W	YFL068W	P0CX99	160 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	YLL066W-A	P0CY00	160 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	YLL067W-A	P0CY01	160 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	YCR043C	P25361	127 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	CSE2	P33308	149 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	RPL14A	P36105	138 aa	Known RBP	4.74	□□□□□ -1.65
TFB4	YPR056W	ETR1	P38071	380 aa		4.74	□□□□□ -1.65
TFB4	YPR056W	RPL14B	P38754	138 aa	Known RBP	4.74	□□□□□ -1.65
TFB4	YPR056W	PFS2	P42841	465 aa	Known RBP	4.74	□□□□□ -1.65
TFB4	YPR056W	YGL230C	P53074	147 aa		4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 38.8 ms