RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C RPB3P16370 318 aaKnown RBP1.56□□□□□ -2.16
RUB1YDR139C MAG1P22134 296 aaKnown RBP1.56□□□□□ -2.16
RUB1YDR139C TVP38P36164 337 aa1.56□□□□□ -2.16
RUB1YDR139C TRM5P38793 499 aa1.56□□□□□ -2.16
RUB1YDR139C LSM7P53905 115 aaKnown RBP1.56□□□□□ -2.16
RUB1YDR139C COG5P53951 403 aa1.56□□□□□ -2.16
RUB1YDR139C PET191Q02772 108 aa1.56□□□□□ -2.16
RUB1YDR139C YDL180WQ12301 547 aa1.56□□□□□ -2.16
RUB1YDR139C YFR032C-BQ8TGU2 87 aa1.56□□□□□ -2.16
RUB1YDR139C PGA2P53903 129 aa1.55□□□□□ -2.16
RUB1YDR139C YDR274CP87283 123 aa1.55□□□□□ -2.16
RUB1YDR139C BNA7Q04066 261 aa1.55□□□□□ -2.16
RUB1YDR139C MDM32Q12171 622 aa1.55□□□□□ -2.16
RUB1YDR139C YLR236CA0A023PZG4 107 aa1.54□□□□□ -2.16
RUB1YDR139C SIR2P06700 562 aa1.54□□□□□ -2.16
RUB1YDR139C ARG80P07249 177 aa1.54□□□□□ -2.16
RUB1YDR139C CPA1P07258 411 aaKnown RBP1.54□□□□□ -2.16
RUB1YDR139C SPS18P32572 300 aa1.54□□□□□ -2.16
RUB1YDR139C MPA43P53583 542 aaPredicted RBP1.54□□□□□ -2.16
RUB1YDR139C RNH1Q04740 348 aa1.54□□□□□ -2.16
RUB1YDR139C CYR1P08678 2026 aaKnown RBP1.54□□□□□ -2.16
RUB1YDR139C MER1P16523 270 aa1.53□□□□□ -2.16
RUB1YDR139C CKS1P20486 150 aaKnown RBP1.53□□□□□ -2.16
RUB1YDR139C ATP15P21306 62 aa1.53□□□□□ -2.16
RUB1YDR139C YCR087C-AP37263 153 aa1.53□□□□□ -2.16
RUB1YDR139C IKI1P38874 309 aa1.53□□□□□ -2.16
RUB1YDR139C HMF1P40037 129 aaKnown RBP1.53□□□□□ -2.16
RUB1YDR139C YER076CP40049 302 aa1.53□□□□□ -2.16
RUB1YDR139C CUE4Q04201 117 aaPredicted RBP1.53□□□□□ -2.16
RUB1YDR139C YNG1Q08465 219 aa1.53□□□□□ -2.16
RUB1YDR139C TAF14P35189 244 aa1.52□□□□□ -2.17
RUB1YDR139C MSB2P32334 1306 aa1.51□□□□□ -2.17
RUB1YDR139C RPL27AP0C2H6 136 aaKnown RBP1.51□□□□□ -2.17
RUB1YDR139C SEC11P15367 167 aa1.51□□□□□ -2.17
RUB1YDR139C OPY1P38271 328 aa1.51□□□□□ -2.17
RUB1YDR139C UBC7Q02159 165 aa1.51□□□□□ -2.17
RUB1YDR139C YOL160WQ08321 113 aa1.51□□□□□ -2.17
RUB1YDR139C RAD28Q12021 506 aa1.51□□□□□ -2.17
RUB1YDR139C GIS3Q12418 502 aa1.51□□□□□ -2.17
RUB1YDR139C IKI3Q06706 1349 aaKnown RBP1.5□□□□□ -2.17
RUB1YDR139C RFA3P26755 122 aaKnown RBP1.5□□□□□ -2.17
RUB1YDR139C HNT1Q04344 158 aaKnown RBP1.5□□□□□ -2.17
RUB1YDR139C YNL146C-AQ3E7Z1 64 aa1.5□□□□□ -2.17
RUB1YDR139C KDX1P36005 433 aa1.49□□□□□ -2.17
RUB1YDR139C YER034WP40022 185 aaKnown RBP1.49□□□□□ -2.17
RUB1YDR139C RIO2P40160 425 aaKnown RBP1.49□□□□□ -2.17
RUB1YDR139C AIM25P47140 327 aa1.49□□□□□ -2.17
RUB1YDR139C TIM11P81449 96 aaPredicted RBP1.49□□□□□ -2.17
RUB1YDR139C HTB1P02293 131 aaKnown RBP1.48□□□□□ -2.17
RUB1YDR139C HTB2P02294 131 aa1.48□□□□□ -2.17
RUB1YDR139C RPB4P20433 221 aaPredicted RBP1.48□□□□□ -2.17
RUB1YDR139C VMA22P38784 181 aa1.48□□□□□ -2.17
RUB1YDR139C ODC2Q99297 307 aa1.48□□□□□ -2.17
RUB1YDR139C VAR1P02381 398 aa1.47□□□□□ -2.17
RUB1YDR139C NTG1P31378 399 aa1.47□□□□□ -2.17
RUB1YDR139C ERG10P41338 398 aaKnown RBP1.47□□□□□ -2.17
RUB1YDR139C YMR226CQ05016 267 aaKnown RBP1.47□□□□□ -2.17
RUB1YDR139C YHR007C-AQ07074 71 aa1.47□□□□□ -2.17
RUB1YDR139C SPO13P23624 291 aa1.46□□□□□ -2.18
RUB1YDR139C YCR090CP25654 182 aaKnown RBP1.46□□□□□ -2.18
RUB1YDR139C OCH1P31755 480 aa1.46□□□□□ -2.18
RUB1YDR139C MPC3P53311 146 aa1.46□□□□□ -2.18
RUB1YDR139C GGA1Q06336 557 aa1.46□□□□□ -2.18
RUB1YDR139C YRA1Q12159 226 aaKnown RBP1.46□□□□□ -2.18
RUB1YDR139C CDC36P06100 191 aaPredicted RBP1.45□□□□□ -2.18
RUB1YDR139C PAN3P36102 679 aaPredicted RBP1.45□□□□□ -2.18
RUB1YDR139C ECM4P36156 370 aa1.45□□□□□ -2.18
RUB1YDR139C TVP23P38962 199 aa1.45□□□□□ -2.18
RUB1YDR139C AIM2P39721 246 aa1.45□□□□□ -2.18
RUB1YDR139C RCE1Q03530 315 aa1.45□□□□□ -2.18
RUB1YDR139C FUS2Q05670 677 aa1.45□□□□□ -2.18
RUB1YDR139C POR1P04840 283 aaKnown RBP1.44□□□□□ -2.18
RUB1YDR139C CNB1P25296 175 aa1.44□□□□□ -2.18
RUB1YDR139C RFC4P40339 323 aaKnown RBP1.44□□□□□ -2.18
RUB1YDR139C FLX1P40464 311 aa1.44□□□□□ -2.18
RUB1YDR139C YAE1P47118 141 aaPredicted RBP1.44□□□□□ -2.18
RUB1YDR139C ARO8P53090 500 aaKnown RBP1.44□□□□□ -2.18
RUB1YDR139C GET1P53192 235 aa1.44□□□□□ -2.18
RUB1YDR139C YPR174CQ06616 221 aaPredicted RBP1.44□□□□□ -2.18
RUB1YDR139C DGA1Q08650 418 aa1.44□□□□□ -2.18
RUB1YDR139C CBF1P17106 351 aa1.43□□□□□ -2.18
RUB1YDR139C EDC3P39998 551 aaKnown RBP1.43□□□□□ -2.18
RUB1YDR139C MRPS17Q03246 237 aaPredicted RBP1.43□□□□□ -2.18
RUB1YDR139C DYN3Q04949 312 aa1.43□□□□□ -2.18
RUB1YDR139C MBF1O14467 151 aaKnown RBP1.42□□□□□ -2.18
RUB1YDR139C MDM35O60200 86 aa1.42□□□□□ -2.18
RUB1YDR139C YKT6P36015 200 aaKnown RBP1.42□□□□□ -2.18
RUB1YDR139C YEA4P40004 342 aa1.42□□□□□ -2.18
RUB1YDR139C YPL073CP40323 161 aa1.42□□□□□ -2.18
RUB1YDR139C SKI6P46948 246 aaPredicted RBP1.42□□□□□ -2.18
RUB1YDR139C MMS2P53152 137 aa1.42□□□□□ -2.18
RUB1YDR139C YNL247WP53852 767 aaKnown RBP1.42□□□□□ -2.18
RUB1YDR139C MRS1P07266 363 aa1.41□□□□□ -2.18
RUB1YDR139C MATALPHA2P0CY08 210 aa1.41□□□□□ -2.18
RUB1YDR139C HMLALPHA2P0CY09 210 aa1.41□□□□□ -2.18
RUB1YDR139C YPK2P18961 677 aa1.41□□□□□ -2.18
RUB1YDR139C ASF2P32448 525 aaPredicted RBP1.41□□□□□ -2.18
RUB1YDR139C YER134CP40081 178 aa1.41□□□□□ -2.18
RUB1YDR139C SER2P42941 309 aa1.41□□□□□ -2.18
RUB1YDR139C CWC27Q02770 301 aa1.41□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms