RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 RAP1GAPP47736 663 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 YWHAEP62258 255 aaKnown RBP14.3□□□□□ -0.12
HMGB1-202ENST00000339872 NAA35Q5VZE5 725 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 FBXO38Q6PIJ6 1188 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 RAET1EQ8TD07 263 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 CPA5Q8WXQ8 436 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 RPGRIP1Q96KN7 1286 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 CXCL16Q9H2A7 254 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 SMARCAL1Q9NZC9 954 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 GTF3C4Q9UKN8 822 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 AGAP1Q9UPQ3 857 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 CDY2AQ9Y6F7 541 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 KCNK3O14649 394 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 RECQL4O94761 1208 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 NSFP46459 744 aaKnown RBP14.3□□□□□ -0.12
HMGB1-202ENST00000339872 HADHBP55084 474 aaKnown RBP14.3□□□□□ -0.12
HMGB1-202ENST00000339872 TUBB4BP68371 445 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 TRIM72Q6ZMU5 477 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 RSPH3Q86UC2 560 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 NT5DC3Q86UY8 548 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 PDCL2Q8N4E4 241 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 KLHDC9Q8NEP7 349 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 CYFIP2Q96F07 1278 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 BCO2Q9BYV7 579 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 PLEKHA5Q9HAU0 1116 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 AMFRQ9UKV5 643 aa14.3□□□□□ -0.12
HMGB1-202ENST00000339872 CYP1A1P04798 512 aaPredicted RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 CTSHP09668 335 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 RHOXF2BP0C7M4 288 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 ATICP31939 592 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 MAP2K2P36507 400 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 PAFAH1B1P43034 410 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 VEGFBP49765 207 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 CENPCQ03188 943 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 C2orf54Q08AI8 447 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 GLRA4Q5JXX5 417 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 FAM228AQ86W67 206 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 ZNF606Q8WXB4 792 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 WNT8BQ93098 351 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 HPDLQ96IR7 371 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 MS4A14Q96JA4 679 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 RHOXF2Q9BQY4 288 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 NUP85Q9BW27 656 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 SMYD3Q9H7B4 428 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 CNOT8Q9UFF9 292 aaKnown RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 STXBP5LQ9Y2K9 1186 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 NOC2LQ9Y3T9 749 aaKnown RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 TRPV2Q9Y5S1 764 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 CYP1A2P05177 515 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 AKAP5P24588 427 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 BRD2P25440 801 aaKnown RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 CST5P28325 142 aaPredicted RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 CDH8P55286 799 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 NOMO3P69849 1222 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 RBP5P82980 135 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 TCEAL1Q15170 157 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 MAP3K21Q5TCX8 1036 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 MCOLN2Q8IZK6 566 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 ZNF564Q8TBZ8 553 aaPredicted RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 CALR3Q96L12 384 aaKnown RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 ZMAT2Q96NC0 199 aaKnown RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 SDCBP2Q9H190 292 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 RNF216Q9NWF9 866 aaPredicted RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 DDX20Q9UHI6 824 aaKnown RBP14.29□□□□□ -0.12
HMGB1-202ENST00000339872 DERAQ9Y315 318 aa14.29□□□□□ -0.12
HMGB1-202ENST00000339872 HTTP42858 3142 aa14.28□□□□□ -0.12
HMGB1-202ENST00000339872 TMEM110-MUSTN1A8MSY1 372 aa14.28□□□□□ -0.12
HMGB1-202ENST00000339872 P4HA1P13674 534 aa14.28□□□□□ -0.12
HMGB1-202ENST00000339872 CFAP221Q4G0U5 840 aa14.28□□□□□ -0.12
HMGB1-202ENST00000339872 UBXN11Q5T124 520 aa14.28□□□□□ -0.12
HMGB1-202ENST00000339872 CCSAPQ6IQ19 270 aaPredicted RBP14.28□□□□□ -0.12
HMGB1-202ENST00000339872 ZNF572Q7Z3I7 529 aaPredicted RBP14.28□□□□□ -0.12
HMGB1-202ENST00000339872 SERINC5Q86VE9 423 aa14.28□□□□□ -0.12
HMGB1-202ENST00000339872 PCSK9Q8NBP7 692 aaKnown RBP14.28□□□□□ -0.12
HMGB1-202ENST00000339872 VRTNQ9H8Y1 702 aa14.28□□□□□ -0.12
HMGB1-202ENST00000339872 ABCB6Q9NP58 842 aa14.28□□□□□ -0.12
HMGB1-202ENST00000339872 MTA2O94776 668 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 HTRA3P83110 453 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 C2CD6Q53TS8 623 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 TWF2Q6IBS0 349 aaKnown RBP14.27□□□□□ -0.12
HMGB1-202ENST00000339872 C11orf63Q6NUN7 778 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 TRIM11Q96F44 468 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 HES6Q96HZ4 224 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 FAXDC2Q96IV6 333 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 PARD6BQ9BYG5 372 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 ANKZF1Q9H8Y5 726 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 RNF19AQ9NV58 838 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 CNTN3Q9P232 1028 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 UVRAGQ9P2Y5 699 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 TUBGCP4Q9UGJ1 667 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 PARP2Q9UGN5 583 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 DNAH12Q6ZR08 3092 aa14.27□□□□□ -0.12
HMGB1-202ENST00000339872 H2AFXP16104 143 aaPredicted RBP14.27□□□□□ -0.13
HMGB1-202ENST00000339872 TNNC1P63316 161 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 MESDQ14696 234 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 MON1BQ7L1V2 547 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 RNF180Q86T96 592 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 SESTD1Q86VW0 696 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 SPATA4Q8NEY3 305 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 BEST2Q8NFU1 509 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms