RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C MGE1P38523 228 aa7.59□□□□□ -1.19
DEF1YKL054C RTF1P53064 558 aa7.59□□□□□ -1.19
DEF1YKL054C PUF6Q04373 656 aaKnown RBP7.58□□□□□ -1.2
DEF1YKL054C POB3Q04636 552 aaKnown RBP7.58□□□□□ -1.2
DEF1YKL054C PBP2P38151 413 aaKnown RBP RIP-Chip data7.57□□□□□ -1.2not detected
DEF1YKL054C TAT2P38967 592 aa7.56□□□□□ -1.2
DEF1YKL054C AGE1Q04412 482 aa7.56□□□□□ -1.2
DEF1YKL054C NPL4P33755 580 aa7.56□□□□□ -1.2
DEF1YKL054C PNP1Q05788 311 aa7.56□□□□□ -1.2
DEF1YKL054C GCD11P32481 527 aaKnown RBP7.55□□□□□ -1.2
DEF1YKL054C YPP1P46951 817 aa7.55□□□□□ -1.2
DEF1YKL054C ACF4P47129 309 aa7.55□□□□□ -1.2
DEF1YKL054C SLY41P22215 453 aa7.55□□□□□ -1.2
DEF1YKL054C SSD1P24276 1250 aaKnown RBP RIP-Chip data7.55□□□□□ -1.2not detected
DEF1YKL054C YJL049WP47048 450 aa7.55□□□□□ -1.2
DEF1YKL054C YJR142WP47173 342 aa7.55□□□□□ -1.2
DEF1YKL054C NAF1P53919 492 aaKnown RBP7.55□□□□□ -1.2
DEF1YKL054C BRE1Q07457 700 aaKnown RBP7.55□□□□□ -1.2
DEF1YKL054C MCM16Q12262 181 aa7.55□□□□□ -1.2
DEF1YKL054C STI1P15705 589 aaKnown RBP RIP-Chip data7.54□□□□□ -1.2not detected
DEF1YKL054C VRP1P37370 817 aa7.54□□□□□ -1.2
DEF1YKL054C BDF2Q07442 638 aa7.54□□□□□ -1.2
DEF1YKL054C YDL121CQ07541 149 aa7.54□□□□□ -1.2
DEF1YKL054C UBP12P39538 1254 aa7.54□□□□□ -1.2
DEF1YKL054C SPR28Q04921 423 aa7.54□□□□□ -1.2
DEF1YKL054C PRT1P06103 763 aaKnown RBP7.53□□□□□ -1.2
DEF1YKL054C QDR1P40475 563 aa7.53□□□□□ -1.2
DEF1YKL054C NOP2P40991 618 aaKnown RBP7.53□□□□□ -1.2
DEF1YKL054C ROM1P53046 1155 aa7.52□□□□□ -1.2
DEF1YKL054C MTO1P53070 669 aa7.52□□□□□ -1.2
DEF1YKL054C GPI13Q07830 1017 aa7.52□□□□□ -1.2
DEF1YKL054C MNN1P39106 762 aa7.52□□□□□ -1.21
DEF1YKL054C YGL081WP53156 320 aa7.52□□□□□ -1.21
DEF1YKL054C GAL11P19659 1081 aa7.51□□□□□ -1.21
DEF1YKL054C RPA135P22138 1203 aaKnown RBP7.51□□□□□ -1.21
DEF1YKL054C BOI2P39969 1040 aa7.51□□□□□ -1.21
DEF1YKL054C TUB4P53378 473 aa7.51□□□□□ -1.21
DEF1YKL054C PPM2Q08282 695 aa7.51□□□□□ -1.21
DEF1YKL054C VMA4P22203 233 aaKnown RBP7.51□□□□□ -1.21
DEF1YKL054C MCM2P29469 868 aa7.51□□□□□ -1.21
DEF1YKL054C MIP1P15801 1254 aa7.5□□□□□ -1.21
DEF1YKL054C ISW1P38144 1129 aa7.5□□□□□ -1.21
DEF1YKL054C KRI1P42846 591 aaKnown RBP7.5□□□□□ -1.21
DEF1YKL054C EMP47P43555 445 aa7.5□□□□□ -1.21
DEF1YKL054C SVL3Q03088 825 aaKnown RBP7.5□□□□□ -1.21
DEF1YKL054C SDH2P21801 266 aa7.49□□□□□ -1.21
DEF1YKL054C GLO3P38682 493 aaKnown RBP7.49□□□□□ -1.21
DEF1YKL054C CDC53Q12018 815 aaKnown RBP7.49□□□□□ -1.21
DEF1YKL054C PHO4P07270 312 aaKnown RBP7.48□□□□□ -1.21
DEF1YKL054C PHO87P25360 923 aa7.48□□□□□ -1.21
DEF1YKL054C ISF1P32488 338 aa7.48□□□□□ -1.21
DEF1YKL054C BCK2P33306 851 aa7.48□□□□□ -1.21
DEF1YKL054C ACS2P52910 683 aaKnown RBP7.48□□□□□ -1.21
DEF1YKL054C KIP3P53086 805 aaKnown RBP7.48□□□□□ -1.21
DEF1YKL054C TRM1P15565 570 aaKnown RBP7.48□□□□□ -1.21
DEF1YKL054C BOI1P38041 980 aaKnown RBP7.48□□□□□ -1.21
DEF1YKL054C PAC1P39946 494 aaKnown RBP7.48□□□□□ -1.21
DEF1YKL054C SRS2P12954 1174 aa7.47□□□□□ -1.21
DEF1YKL054C DNM1P54861 757 aa7.47□□□□□ -1.21
DEF1YKL054C YGR161W-CQ3E744 92 aa7.47□□□□□ -1.21
DEF1YKL054C MAD1P40957 749 aa7.47□□□□□ -1.21
DEF1YKL054C TY4A-JP47023 414 aa7.47□□□□□ -1.21
DEF1YKL054C WRS1Q12109 432 aaKnown RBP7.47□□□□□ -1.21
DEF1YKL054C FUR4P05316 633 aaKnown RBP7.46□□□□□ -1.22
DEF1YKL054C BUB1P41695 1021 aaKnown RBP RIP-Chip data7.46□□□□□ -1.22not detected
DEF1YKL054C PUS6P53294 404 aa7.46□□□□□ -1.22
DEF1YKL054C SEC6P32844 805 aa7.46□□□□□ -1.22
DEF1YKL054C RRN7P40992 514 aa7.46□□□□□ -1.22
DEF1YKL054C RMD1Q03441 430 aa7.46□□□□□ -1.22
DEF1YKL054C ECM16Q04217 1267 aaKnown RBP7.45□□□□□ -1.22
DEF1YKL054C ESF1Q06344 628 aaKnown RBP7.45□□□□□ -1.22
DEF1YKL054C MET6P05694 767 aaKnown RBP7.44□□□□□ -1.22
DEF1YKL054C RPT1P33299 467 aaKnown RBP7.44□□□□□ -1.22
DEF1YKL054C DAK2P43550 591 aa7.44□□□□□ -1.22
DEF1YKL054C SAS4Q04003 481 aa7.44□□□□□ -1.22
DEF1YKL054C GYP1Q08484 637 aa7.44□□□□□ -1.22
DEF1YKL054C FUI1P38196 639 aa7.44□□□□□ -1.22
DEF1YKL054C YEN1P40028 759 aa7.44□□□□□ -1.22
DEF1YKL054C AIM21P40563 679 aa7.44□□□□□ -1.22
DEF1YKL054C LSO1Q3E827 93 aa7.44□□□□□ -1.22
DEF1YKL054C HUL5P53119 910 aa7.43□□□□□ -1.22
DEF1YKL054C TMA64Q04600 565 aaKnown RBP7.43□□□□□ -1.22
DEF1YKL054C PUN1Q06991 263 aa7.43□□□□□ -1.22
DEF1YKL054C ENV9Q08651 330 aa7.43□□□□□ -1.22
DEF1YKL054C KAR1P11927 433 aa7.43□□□□□ -1.22
DEF1YKL054C HAP4P14064 554 aa7.43□□□□□ -1.22
DEF1YKL054C NUP82P40368 713 aa7.43□□□□□ -1.22
DEF1YKL054C APL6P46682 809 aa7.43□□□□□ -1.22
DEF1YKL054C ITC1P53125 1264 aa7.43□□□□□ -1.22
DEF1YKL054C RAD2P07276 1031 aa7.42□□□□□ -1.22
DEF1YKL054C CLN2P20438 545 aa7.42□□□□□ -1.22
DEF1YKL054C VPS24P36095 224 aaKnown RBP7.42□□□□□ -1.22
DEF1YKL054C PWP2P25635 923 aaKnown RBP7.42□□□□□ -1.22
DEF1YKL054C MPE1P35728 441 aaKnown RBP7.42□□□□□ -1.22
DEF1YKL054C XDJ1P39102 459 aa7.42□□□□□ -1.22
DEF1YKL054C RTT106P40161 455 aa7.42□□□□□ -1.22
DEF1YKL054C GIR2Q03768 265 aaPredicted RBP7.42□□□□□ -1.22
DEF1YKL054C GRX1P25373 110 aaKnown RBP7.41□□□□□ -1.22
DEF1YKL054C TOA1P32773 286 aa7.41□□□□□ -1.22
DEF1YKL054C PAF1P38351 445 aa7.41□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 148 ms