RNA–Protein interactions for RNA: YIL148W

RPL40A, Transcript of Ubiquitin-ribosomal 60S subunit protein L40A fusion protein, yeast

Gene RPL40A, Length 387 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPL40A	YIL148W	ISF1	P32488	338 aa		4.36	□□□□□ -1.71
RPL40A	YIL148W	UTR2	P32623	467 aa		4.36	□□□□□ -1.71
RPL40A	YIL148W	SLN1	P39928	1220 aa	Predicted RBP	4.36	□□□□□ -1.71
RPL40A	YIL148W	APL6	P46682	809 aa		4.36	□□□□□ -1.71
RPL40A	YIL148W	KIN1	P13185	1064 aa		4.35	□□□□□ -1.71
RPL40A	YIL148W	EMP47	P43555	445 aa		4.35	□□□□□ -1.71
RPL40A	YIL148W	YDR215C	Q12240	137 aa		4.35	□□□□□ -1.71
RPL40A	YIL148W	SSA2	P10592	639 aa	Known RBP	4.34	□□□□□ -1.71
RPL40A	YIL148W	FPS1	P23900	669 aa		4.34	□□□□□ -1.71
RPL40A	YIL148W	AMN1	P38285	549 aa	Predicted RBP	4.34	□□□□□ -1.71
RPL40A	YIL148W	HAL5	P38970	855 aa	Known RBP	4.34	□□□□□ -1.71
RPL40A	YIL148W	BOI2	P39969	1040 aa		4.34	□□□□□ -1.71
RPL40A	YIL148W	DMA2	P53924	522 aa		4.34	□□□□□ -1.71
RPL40A	YIL148W	MCA1	Q08601	432 aa		4.34	□□□□□ -1.71
RPL40A	YIL148W	GLT1	Q12680	2145 aa	Known RBP	4.33	□□□□□ -1.72
RPL40A	YIL148W	SHM1	P37292	490 aa	Predicted RBP	4.33	□□□□□ -1.72
RPL40A	YIL148W	JJJ2	P46997	583 aa		4.33	□□□□□ -1.72
RPL40A	YIL148W	IRE1	P32361	1115 aa		4.32	□□□□□ -1.72
RPL40A	YIL148W	ALA1	P40825	983 aa	Known RBP	4.32	□□□□□ -1.72
RPL40A	YIL148W	SUM1	P46676	1062 aa		4.32	□□□□□ -1.72
RPL40A	YIL148W	MCM16	Q12262	181 aa		4.32	□□□□□ -1.72
RPL40A	YIL148W	MRPL16	P38064	232 aa		4.31	□□□□□ -1.72
RPL40A	YIL148W	TBS1	P38114	1094 aa		4.31	□□□□□ -1.72
RPL40A	YIL148W	MRX12	P47084	519 aa		4.31	□□□□□ -1.72
RPL40A	YIL148W	LSB6	P42951	607 aa		4.3	□□□□□ -1.72
RPL40A	YIL148W	PSH1	Q12161	406 aa		4.3	□□□□□ -1.72
RPL40A	YIL148W	PDC5	P16467	563 aa	Known RBP	4.29	□□□□□ -1.72
RPL40A	YIL148W	PDC6	P26263	563 aa	Known RBP	4.29	□□□□□ -1.72
RPL40A	YIL148W	SLX8	P40072	274 aa		4.29	□□□□□ -1.72
RPL40A	YIL148W	YDJ1	P25491	409 aa	Known RBP	4.28	□□□□□ -1.72
RPL40A	YIL148W	STB3	Q12427	513 aa		4.28	□□□□□ -1.72
RPL40A	YIL148W	KNS1	P32350	737 aa	Predicted RBP	4.27	□□□□□ -1.73
RPL40A	YIL148W	CSE4	P36012	229 aa		4.27	□□□□□ -1.73
RPL40A	YIL148W	MET1	P36150	593 aa		4.27	□□□□□ -1.73
RPL40A	YIL148W	TAT1	P38085	619 aa		4.27	□□□□□ -1.73
RPL40A	YIL148W	SPR3	P41901	512 aa		4.27	□□□□□ -1.73
RPL40A	YIL148W	PRY1	P47032	299 aa		4.27	□□□□□ -1.73
RPL40A	YIL148W	HDA3	Q06623	655 aa		4.27	□□□□□ -1.73
RPL40A	YIL148W	RPS31	P05759	152 aa	Known RBP	4.26	□□□□□ -1.73
RPL40A	YIL148W	SOH1	P38633	127 aa		4.26	□□□□□ -1.73
RPL40A	YIL148W	TY1A-DR2	Q03964	440 aa	Known RBP	4.26	□□□□□ -1.73
RPL40A	YIL148W	BRL1	P38770	471 aa		4.25	□□□□□ -1.73
RPL40A	YIL148W	SPT5	P27692	1063 aa	Known RBP	4.24	□□□□□ -1.73
RPL40A	YIL148W	MAC1	P35192	417 aa		4.24	□□□□□ -1.73
RPL40A	YIL148W	GUA1	P38625	525 aa	Known RBP	4.24	□□□□□ -1.73
RPL40A	YIL148W	MSC7	P38694	644 aa		4.23	□□□□□ -1.73
RPL40A	YIL148W	RLF2	Q12495	606 aa		4.23	□□□□□ -1.73
RPL40A	YIL148W	YBL036C	P38197	257 aa		4.22	□□□□□ -1.73
RPL40A	YIL148W	ALO1	P54783	526 aa	Known RBP	4.22	□□□□□ -1.73
RPL40A	YIL148W	YPL034W	Q03083	165 aa		4.22	□□□□□ -1.73
RPL40A	YIL148W	YPQ2	Q06328	317 aa		4.22	□□□□□ -1.73
RPL40A	YIL148W	ALD2	P47771	506 aa		4.21	□□□□□ -1.74
RPL40A	YIL148W	YNL165W	P53891	406 aa		4.21	□□□□□ -1.74
RPL40A	YIL148W	HPC2	Q01448	625 aa		4.21	□□□□□ -1.74
RPL40A	YIL148W	UTP13	Q05946	817 aa	Known RBP	4.21	□□□□□ -1.74
RPL40A	YIL148W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
RPL40A	YIL148W	LEU1	P07264	779 aa	Known RBP	4.2	□□□□□ -1.74
RPL40A	YIL148W	SWI5	P08153	709 aa		4.2	□□□□□ -1.74
RPL40A	YIL148W	ATG3	P40344	310 aa		4.19	□□□□□ -1.74
RPL40A	YIL148W	BIO2	P32451	375 aa		4.18	□□□□□ -1.74
RPL40A	YIL148W	RGP1	P16664	663 aa		4.17	□□□□□ -1.74
RPL40A	YIL148W	OMA1	P36163	345 aa		4.17	□□□□□ -1.74
RPL40A	YIL148W	TPS3	P38426	1054 aa	Known RBP	4.17	□□□□□ -1.74
RPL40A	YIL148W	INP52	P50942	1183 aa		4.17	□□□□□ -1.74
RPL40A	YIL148W	BUD9	P53226	547 aa		4.17	□□□□□ -1.74
RPL40A	YIL148W	TFB3	Q03290	321 aa		4.17	□□□□□ -1.74
RPL40A	YIL148W	PKC1	P24583	1151 aa		4.16	□□□□□ -1.74
RPL40A	YIL148W	AIM9	P40053	627 aa	Known RBP	4.16	□□□□□ -1.74
RPL40A	YIL148W	ENO2	P00925	437 aa	Known RBP	4.15	□□□□□ -1.75
RPL40A	YIL148W	SUP45	P12385	437 aa	Known RBP	4.15	□□□□□ -1.75
RPL40A	YIL148W	PGM2	P37012	569 aa	Known RBP	4.15	□□□□□ -1.75
RPL40A	YIL148W	YPP1	P46951	817 aa		4.15	□□□□□ -1.75
RPL40A	YIL148W	NHA1	Q99271	985 aa		4.15	□□□□□ -1.75
RPL40A	YIL148W	RPS6A	P0CX37	236 aa	Known RBP	4.14	□□□□□ -1.75
RPL40A	YIL148W	RPS6B	P0CX38	236 aa	Predicted RBP	4.14	□□□□□ -1.75
RPL40A	YIL148W	ALG14	P38242	237 aa		4.14	□□□□□ -1.75
RPL40A	YIL148W	RPL34B	P40525	121 aa	Known RBP	4.14	□□□□□ -1.75
RPL40A	YIL148W	IRC24	P40580	263 aa		4.14	□□□□□ -1.75
RPL40A	YIL148W	YNL108C	P53929	270 aa		4.14	□□□□□ -1.75
RPL40A	YIL148W	RDS2	P19541	446 aa	Known RBP	4.13	□□□□□ -1.75
RPL40A	YIL148W	MLF3	P32047	452 aa		4.13	□□□□□ -1.75
RPL40A	YIL148W	RPP1A	P05318	106 aa	Predicted RBP	4.12	□□□□□ -1.75
RPL40A	YIL148W	MCM1	P11746	286 aa		4.12	□□□□□ -1.75
RPL40A	YIL148W	YTA6	P40328	754 aa		4.12	□□□□□ -1.75
RPL40A	YIL148W	PRK1	P40494	810 aa		4.12	□□□□□ -1.75
RPL40A	YIL148W	YJL007C	P47080	104 aa		4.12	□□□□□ -1.75
RPL40A	YIL148W	GAS5	Q08193	484 aa		4.12	□□□□□ -1.75
RPL40A	YIL148W	Q0182	Q9ZZW1	134 aa		4.12	□□□□□ -1.75
RPL40A	YIL148W	AI3	P03877	415 aa		4.11	□□□□□ -1.75
RPL40A	YIL148W	NAR1	P23503	491 aa	Known RBP	4.11	□□□□□ -1.75
RPL40A	YIL148W	NTH2	P35172	780 aa		4.11	□□□□□ -1.75
RPL40A	YIL148W	RIM21	P48565	533 aa		4.11	□□□□□ -1.75
RPL40A	YIL148W	PGM1	P33401	570 aa	Known RBP	4.1	□□□□□ -1.75
RPL40A	YIL148W	HEH2	Q03281	663 aa		4.1	□□□□□ -1.75
RPL40A	YIL148W	GIS4	Q04233	774 aa		4.09	□□□□□ -1.75
RPL40A	YIL148W	BIM1	P40013	344 aa		4.08	□□□□□ -1.76
RPL40A	YIL148W	AVT1	P47082	602 aa		4.08	□□□□□ -1.76
RPL40A	YIL148W	MTO1	P53070	669 aa		4.08	□□□□□ -1.76
RPL40A	YIL148W	SAC7	P17121	654 aa		4.07	□□□□□ -1.76
RPL40A	YIL148W	PDI1	P17967	522 aa	Known RBP	4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 31.1 ms