RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C GLT1Q12680 2145 aaKnown RBP6.71□□□□□ -1.33
RTR1YER139C YDJ1P25491 409 aaKnown RBP6.71□□□□□ -1.34
RTR1YER139C SKN7P38889 622 aa6.71□□□□□ -1.34
RTR1YER139C SUM1P46676 1062 aa6.7□□□□□ -1.34
RTR1YER139C JJJ2P46997 583 aa6.7□□□□□ -1.34
RTR1YER139C YBL036CP38197 257 aa6.69□□□□□ -1.34
RTR1YER139C ALA1P40825 983 aaKnown RBP6.69□□□□□ -1.34
RTR1YER139C YMR187CQ03236 431 aa6.69□□□□□ -1.34
RTR1YER139C YNR014WP53719 212 aa6.68□□□□□ -1.34
RTR1YER139C SHM1P37292 490 aaPredicted RBP6.67□□□□□ -1.34
RTR1YER139C SLX8P40072 274 aa6.67□□□□□ -1.34
RTR1YER139C GPM1P00950 247 aaKnown RBP6.66□□□□□ -1.34
RTR1YER139C SBP1P10080 294 aaKnown RBP6.66□□□□□ -1.34
RTR1YER139C IRE1P32361 1115 aa6.66□□□□□ -1.34
RTR1YER139C SOH1P38633 127 aa6.66□□□□□ -1.34
RTR1YER139C FPS1P23900 669 aa6.65□□□□□ -1.34
RTR1YER139C HDA3Q06623 655 aa6.65□□□□□ -1.34
RTR1YER139C MCX1P38323 520 aaPredicted RBP6.64□□□□□ -1.35
RTR1YER139C LEU3P08638 886 aa6.63□□□□□ -1.35
RTR1YER139C HPC2Q01448 625 aa6.63□□□□□ -1.35
RTR1YER139C UTP13Q05946 817 aaKnown RBP6.63□□□□□ -1.35
RTR1YER139C PSH1Q12161 406 aa6.63□□□□□ -1.35
RTR1YER139C YCK2P23292 546 aaKnown RBP6.62□□□□□ -1.35
RTR1YER139C PDC6P26263 563 aaKnown RBP6.62□□□□□ -1.35
RTR1YER139C BIO2P32451 375 aa6.62□□□□□ -1.35
RTR1YER139C MRPL16P38064 232 aa6.62□□□□□ -1.35
RTR1YER139C BOI2P39969 1040 aa6.62□□□□□ -1.35
RTR1YER139C ATG3P40344 310 aa6.62□□□□□ -1.35
RTR1YER139C BRL1P38770 471 aa6.61□□□□□ -1.35
RTR1YER139C STB3Q12427 513 aa6.61□□□□□ -1.35
RTR1YER139C YPP1P46951 817 aa6.6□□□□□ -1.35
RTR1YER139C TFB3Q03290 321 aa6.6□□□□□ -1.35
RTR1YER139C YDR215CQ12240 137 aa6.6□□□□□ -1.35
RTR1YER139C PKC1P24583 1151 aa6.59□□□□□ -1.35
RTR1YER139C CBC2Q08920 208 aaKnown RBP RIP-Chip data6.58□□□□□ -1.36not detected
RTR1YER139C RPN1P38764 993 aaKnown RBP6.57□□□□□ -1.36
RTR1YER139C SLN1P39928 1220 aaPredicted RBP6.57□□□□□ -1.36
RTR1YER139C YPQ2Q06328 317 aa6.57□□□□□ -1.36
RTR1YER139C RPS31P05759 152 aaKnown RBP6.56□□□□□ -1.36
RTR1YER139C PDC5P16467 563 aaKnown RBP6.56□□□□□ -1.36
RTR1YER139C KNS1P32350 737 aaPredicted RBP6.56□□□□□ -1.36
RTR1YER139C SPR3P41901 512 aa6.56□□□□□ -1.36
RTR1YER139C ENO2P00925 437 aaKnown RBP6.55□□□□□ -1.36
RTR1YER139C SWI5P08153 709 aa6.55□□□□□ -1.36
RTR1YER139C SUP45P12385 437 aaKnown RBP6.55□□□□□ -1.36
RTR1YER139C MET1P36150 593 aa6.55□□□□□ -1.36
RTR1YER139C YNL108CP53929 270 aa6.55□□□□□ -1.36
RTR1YER139C MCA1Q08601 432 aa6.55□□□□□ -1.36
RTR1YER139C AMN1P38285 549 aaPredicted RBP6.54□□□□□ -1.36
RTR1YER139C TY1A-DR2Q03964 440 aaKnown RBP6.54□□□□□ -1.36
RTR1YER139C AIM9P40053 627 aaKnown RBP6.53□□□□□ -1.36
RTR1YER139C RIM21P48565 533 aa6.52□□□□□ -1.37
RTR1YER139C LEU1P07264 779 aaKnown RBP6.51□□□□□ -1.37
RTR1YER139C ALD2P47771 506 aa6.51□□□□□ -1.37
RTR1YER139C RDS2P19541 446 aaKnown RBP6.5□□□□□ -1.37
RTR1YER139C MSC7P38694 644 aa6.5□□□□□ -1.37
RTR1YER139C YNL165WP53891 406 aa6.5□□□□□ -1.37
RTR1YER139C TAT1P38085 619 aa6.49□□□□□ -1.37
RTR1YER139C RPS6AP0CX37 236 aaKnown RBP6.48□□□□□ -1.37
RTR1YER139C RPS6BP0CX38 236 aaPredicted RBP6.48□□□□□ -1.37
RTR1YER139C LSB6P42951 607 aa6.48□□□□□ -1.37
RTR1YER139C PRY1P47032 299 aa6.48□□□□□ -1.37
RTR1YER139C RQC2Q12532 1038 aaKnown RBP6.47□□□□□ -1.37
RTR1YER139C RGP1P16664 663 aa6.46□□□□□ -1.38
RTR1YER139C MCM1P11746 286 aa6.45□□□□□ -1.38
RTR1YER139C MLF3P32047 452 aa6.45□□□□□ -1.38
RTR1YER139C YTA6P40328 754 aa6.45□□□□□ -1.38
RTR1YER139C RPP1AP05318 106 aaPredicted RBP6.44□□□□□ -1.38
RTR1YER139C YFL034WP43564 1073 aa6.44□□□□□ -1.38
RTR1YER139C NTH2P35172 780 aa6.43□□□□□ -1.38
RTR1YER139C PDI1P17967 522 aaKnown RBP6.4□□□□□ -1.38
RTR1YER139C MAC1P35192 417 aa6.4□□□□□ -1.38
RTR1YER139C YJL007CP47080 104 aa6.4□□□□□ -1.38
RTR1YER139C YPL034WQ03083 165 aa6.4□□□□□ -1.38
RTR1YER139C Q0182Q9ZZW1 134 aa6.4□□□□□ -1.38
RTR1YER139C TPS3P38426 1054 aaKnown RBP6.39□□□□□ -1.39
RTR1YER139C PGM2P37012 569 aaKnown RBP6.38□□□□□ -1.39
RTR1YER139C MRX10Q05648 414 aa6.38□□□□□ -1.39
RTR1YER139C NHA1Q99271 985 aa6.38□□□□□ -1.39
RTR1YER139C ENO1P00924 437 aaKnown RBP6.37□□□□□ -1.39
RTR1YER139C ALG14P38242 237 aa6.37□□□□□ -1.39
RTR1YER139C TSC13Q99190 310 aa6.37□□□□□ -1.39
RTR1YER139C CYT1P07143 309 aa6.36□□□□□ -1.39
RTR1YER139C PRK1P40494 810 aa6.36□□□□□ -1.39
RTR1YER139C ALO1P54783 526 aaKnown RBP6.36□□□□□ -1.39
RTR1YER139C HEH2Q03281 663 aa6.36□□□□□ -1.39
RTR1YER139C MTO1P53070 669 aa6.35□□□□□ -1.39
RTR1YER139C BUD9P53226 547 aa6.35□□□□□ -1.39
RTR1YER139C NAR1P23503 491 aaKnown RBP6.33□□□□□ -1.4
RTR1YER139C ATG32P40458 529 aa6.32□□□□□ -1.4
RTR1YER139C TIF1P10081 395 aaKnown RBP6.31□□□□□ -1.4
RTR1YER139C PEP12P32854 288 aa6.31□□□□□ -1.4
RTR1YER139C NCL1P38205 684 aaKnown RBP6.31□□□□□ -1.4
RTR1YER139C BIM1P40013 344 aa6.31□□□□□ -1.4
RTR1YER139C SKP1P52286 194 aa6.31□□□□□ -1.4
RTR1YER139C CUS1Q02554 436 aaPredicted RBP6.31□□□□□ -1.4
RTR1YER139C GIS4Q04233 774 aa6.31□□□□□ -1.4
RTR1YER139C RTG2P32608 588 aaKnown RBP6.3□□□□□ -1.4
RTR1YER139C OMA1P36163 345 aa6.3□□□□□ -1.4
RTR1YER139C UTP4Q06679 776 aaKnown RBP6.3□□□□□ -1.4
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms