RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W STE20Q03497 939 aaKnown RBP3.69□□□□□ -1.82
PRP42YDR235W PDC5P16467 563 aaKnown RBP3.68□□□□□ -1.82
PRP42YDR235W GLC3P32775 704 aa3.68□□□□□ -1.82
PRP42YDR235W OMA1P36163 345 aa3.68□□□□□ -1.82
PRP42YDR235W MRPL16P38064 232 aa3.67□□□□□ -1.82
PRP42YDR235W ALA1P40825 983 aaKnown RBP3.67□□□□□ -1.82
PRP42YDR235W FRA1Q07825 749 aa3.67□□□□□ -1.82
PRP42YDR235W SPT2P06843 333 aaPredicted RBP3.66□□□□□ -1.82
PRP42YDR235W YNR021WP53723 404 aaKnown RBP3.66□□□□□ -1.82
PRP42YDR235W MAK16P10962 306 aaPredicted RBP3.66□□□□□ -1.82
PRP42YDR235W IRE1P32361 1115 aa3.66□□□□□ -1.82
PRP42YDR235W UTR2P32623 467 aa3.66□□□□□ -1.82
PRP42YDR235W TBS1P38114 1094 aa3.66□□□□□ -1.82
PRP42YDR235W UTP7P40055 554 aaKnown RBP3.66□□□□□ -1.82
PRP42YDR235W INP52P50942 1183 aa3.66□□□□□ -1.82
PRP42YDR235W ISR1Q06098 443 aaKnown RBP3.65□□□□□ -1.83
PRP42YDR235W SUM1P46676 1062 aa3.64□□□□□ -1.83
PRP42YDR235W JJJ2P46997 583 aa3.64□□□□□ -1.83
PRP42YDR235W TY1A-DR2Q03964 440 aaKnown RBP3.63□□□□□ -1.83
PRP42YDR235W STB3Q12427 513 aa3.63□□□□□ -1.83
PRP42YDR235W SHM1P37292 490 aaPredicted RBP3.62□□□□□ -1.83
PRP42YDR235W PSH1Q12161 406 aa3.62□□□□□ -1.83
PRP42YDR235W TPS3P38426 1054 aaKnown RBP3.61□□□□□ -1.83
PRP42YDR235W SPR3P41901 512 aa3.61□□□□□ -1.83
PRP42YDR235W AVT1P47082 602 aa3.61□□□□□ -1.83
PRP42YDR235W PDC6P26263 563 aaKnown RBP3.6□□□□□ -1.83
PRP42YDR235W MRX12P47084 519 aa3.6□□□□□ -1.83
PRP42YDR235W AIM7Q12156 149 aa3.59□□□□□ -1.84
PRP42YDR235W EMP47P43555 445 aa3.58□□□□□ -1.84
PRP42YDR235W APL6P46682 809 aa3.58□□□□□ -1.84
PRP42YDR235W BUD9P53226 547 aa3.58□□□□□ -1.84
PRP42YDR235W HAL5P38970 855 aaKnown RBP3.57□□□□□ -1.84
PRP42YDR235W SLX8P40072 274 aa3.57□□□□□ -1.84
PRP42YDR235W NHA1Q99271 985 aa3.57□□□□□ -1.84
PRP42YDR235W ISF1P32488 338 aa3.56□□□□□ -1.84
PRP42YDR235W MSC7P38694 644 aa3.56□□□□□ -1.84
PRP42YDR235W RPP1AP05318 106 aaPredicted RBP3.55□□□□□ -1.84
PRP42YDR235W RPS31P05759 152 aaKnown RBP3.55□□□□□ -1.84
PRP42YDR235W SSA2P10592 639 aaKnown RBP3.55□□□□□ -1.84
PRP42YDR235W PGM2P37012 569 aaKnown RBP3.55□□□□□ -1.84
PRP42YDR235W ALG14P38242 237 aa3.55□□□□□ -1.84
PRP42YDR235W LEU1P07264 779 aaKnown RBP3.54□□□□□ -1.84
PRP42YDR235W HDA3Q06623 655 aa3.53□□□□□ -1.84
PRP42YDR235W MCM16Q12262 181 aa3.53□□□□□ -1.84
PRP42YDR235W AI3P03877 415 aa3.52□□□□□ -1.85
PRP42YDR235W PGM1P33401 570 aaKnown RBP3.52□□□□□ -1.85
PRP42YDR235W MED7Q08278 222 aa3.52□□□□□ -1.85
PRP42YDR235W RGP1P16664 663 aa3.52□□□□□ -1.85
PRP42YDR235W SAC7P17121 654 aa3.52□□□□□ -1.85
PRP42YDR235W HPC2Q01448 625 aa3.52□□□□□ -1.85
PRP42YDR235W AOS1Q06624 347 aa3.52□□□□□ -1.85
PRP42YDR235W UTP13Q05946 817 aaKnown RBP3.51□□□□□ -1.85
PRP42YDR235W TRP3P00937 484 aa3.5□□□□□ -1.85
PRP42YDR235W LIP5P32875 414 aa3.5□□□□□ -1.85
PRP42YDR235W CSE4P36012 229 aa3.5□□□□□ -1.85
PRP42YDR235W SOH1P38633 127 aa3.5□□□□□ -1.85
PRP42YDR235W DMA1P38823 416 aa3.5□□□□□ -1.85
PRP42YDR235W ALD2P47771 506 aa3.5□□□□□ -1.85
PRP42YDR235W ARI1P53111 347 aaKnown RBP3.5□□□□□ -1.85
PRP42YDR235W YPQ2Q06328 317 aa3.5□□□□□ -1.85
PRP42YDR235W COQ2P32378 372 aa3.49□□□□□ -1.85
PRP42YDR235W NAB2P32505 525 aaKnown RBP RIP-Chip data3.49□□□□□ -1.85 RIP-Chip
PRP42YDR235W KAE1P36132 386 aa3.49□□□□□ -1.85
PRP42YDR235W YKR073CP36153 106 aa3.49□□□□□ -1.85
PRP42YDR235W ATG3P40344 310 aa3.49□□□□□ -1.85
PRP42YDR235W HEH2Q03281 663 aa3.49□□□□□ -1.85
PRP42YDR235W GAS5Q08193 484 aa3.49□□□□□ -1.85
PRP42YDR235W RRM3P38766 723 aa3.48□□□□□ -1.85
PRP42YDR235W YTA6P40328 754 aa3.48□□□□□ -1.85
PRP42YDR235W NAR1P23503 491 aaKnown RBP3.48□□□□□ -1.85
PRP42YDR235W SPT5P27692 1063 aaKnown RBP3.48□□□□□ -1.85
PRP42YDR235W TFB3Q03290 321 aa3.48□□□□□ -1.85
PRP42YDR235W GIS4Q04233 774 aa3.48□□□□□ -1.85
PRP42YDR235W SWI5P08153 709 aa3.47□□□□□ -1.85
PRP42YDR235W ELM1P32801 640 aa3.47□□□□□ -1.85
PRP42YDR235W PRK1P40494 810 aa3.47□□□□□ -1.85
PRP42YDR235W YDJ1P25491 409 aaKnown RBP3.46□□□□□ -1.86
PRP42YDR235W SFA1P32771 386 aa3.46□□□□□ -1.86
PRP42YDR235W TOS1P38288 455 aa3.46□□□□□ -1.86
PRP42YDR235W YNL165WP53891 406 aa3.46□□□□□ -1.86
PRP42YDR235W CBC2Q08920 208 aaKnown RBP RIP-Chip data3.46□□□□□ -1.86not detected
PRP42YDR235W YLR122CQ12312 125 aa3.46□□□□□ -1.86
PRP42YDR235W PUB1P32588 453 aaKnown RBP RIP-Chip data3.45□□□□□ -1.86not detected
PRP42YDR235W CTH1P47976 325 aa3.45□□□□□ -1.86
PRP42YDR235W MLF3P32047 452 aa3.44□□□□□ -1.86
PRP42YDR235W BRE4Q07660 1125 aa3.44□□□□□ -1.86
PRP42YDR235W MCM1P11746 286 aa3.43□□□□□ -1.86
PRP42YDR235W YBL036CP38197 257 aa3.43□□□□□ -1.86
PRP42YDR235W UBP5P39944 805 aa3.43□□□□□ -1.86
PRP42YDR235W Q0182Q9ZZW1 134 aa3.43□□□□□ -1.86
PRP42YDR235W RSC6P25632 483 aa3.42□□□□□ -1.86
PRP42YDR235W NCL1P38205 684 aaKnown RBP3.42□□□□□ -1.86
PRP42YDR235W YPP1P46951 817 aa3.42□□□□□ -1.86
PRP42YDR235W RPS6AP0CX37 236 aaKnown RBP3.41□□□□□ -1.86
PRP42YDR235W RPS6BP0CX38 236 aaPredicted RBP3.41□□□□□ -1.86
PRP42YDR235W AIM9P40053 627 aaKnown RBP3.41□□□□□ -1.86
PRP42YDR235W YGR130CP53278 816 aa3.41□□□□□ -1.86
PRP42YDR235W CHS2P14180 963 aa3.41□□□□□ -1.86
PRP42YDR235W SAF1P38352 637 aa3.41□□□□□ -1.86
PRP42YDR235W MTO1P53070 669 aa3.41□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 18.8 ms