RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 FAM9AQ8IZU1 332 aaPredicted RBP8.11□□□□□ -1.11
VTI1B-202ENST00000553619 HPS5Q9UPZ3 1129 aa8.11□□□□□ -1.11
VTI1B-202ENST00000553619 NYAP1Q6ZVC0 841 aa8.1□□□□□ -1.11
VTI1B-202ENST00000553619 KIF27Q86VH2 1401 aa8.1□□□□□ -1.11
VTI1B-202ENST00000553619 WDR62O43379 1518 aa8.09□□□□□ -1.11
VTI1B-202ENST00000553619 POLA1P09884 1462 aaPredicted RBP8.09□□□□□ -1.11
VTI1B-202ENST00000553619 TSHZ2Q9NRE2 1034 aa8.09□□□□□ -1.11
VTI1B-202ENST00000553619 TSR3Q9UJK0 312 aaKnown RBP8.09□□□□□ -1.11
VTI1B-202ENST00000553619 RGS20O76081 388 aa8.08□□□□□ -1.12
VTI1B-202ENST00000553619 CERKQ8TCT0 537 aa8.08□□□□□ -1.12
VTI1B-202ENST00000553619 SAMD7Q7Z3H4 446 aa8.07□□□□□ -1.12
VTI1B-202ENST00000553619 ABCA10Q8WWZ4 1543 aa8.07□□□□□ -1.12
VTI1B-202ENST00000553619 IFT140Q96RY7 1462 aa8.06□□□□□ -1.12
VTI1B-202ENST00000553619 THOC2Q8NI27 1593 aaKnown RBP8.06□□□□□ -1.12
VTI1B-202ENST00000553619 NBPF26B4DH59 902 aa8.06□□□□□ -1.12
VTI1B-202ENST00000553619 TATDN2Q93075 761 aa8.06□□□□□ -1.12
VTI1B-202ENST00000553619 PNMA3Q9UL41 463 aa8.06□□□□□ -1.12
VTI1B-202ENST00000553619 CUX2O14529 1486 aa8.06□□□□□ -1.12
VTI1B-202ENST00000553619 RAD54L2Q9Y4B4 1467 aa8.06□□□□□ -1.12
VTI1B-202ENST00000553619 KCNC4Q03721 635 aa8.04□□□□□ -1.12
VTI1B-202ENST00000553619 NUDT18Q6ZVK8 323 aa8.04□□□□□ -1.12
VTI1B-202ENST00000553619 KCNV2Q8TDN2 545 aa8.04□□□□□ -1.12
VTI1B-202ENST00000553619 RBM27Q9P2N5 1060 aaKnown RBP8.04□□□□□ -1.12
VTI1B-202ENST00000553619 MLLT3P42568 568 aaPredicted RBP8.03□□□□□ -1.12
VTI1B-202ENST00000553619 PPP4CP60510 307 aa8.03□□□□□ -1.12
VTI1B-202ENST00000553619 NPDC1Q9NQX5 325 aaPredicted RBP8.03□□□□□ -1.12
VTI1B-202ENST00000553619 WDR97A6NE52 1622 aa8.03□□□□□ -1.12
VTI1B-202ENST00000553619 RUSC2Q8N2Y8 1516 aa8.03□□□□□ -1.12
VTI1B-202ENST00000553619 TDRD9Q8NDG6 1382 aaKnown RBP8.02□□□□□ -1.13
VTI1B-202ENST00000553619 PADI6Q6TGC4 694 aa8.02□□□□□ -1.13
VTI1B-202ENST00000553619 TTC13Q8NBP0 860 aa8.02□□□□□ -1.13
VTI1B-202ENST00000553619 TARBP1Q13395 1621 aaKnown RBP8.02□□□□□ -1.13
VTI1B-202ENST00000553619 GAPVD1Q14C86 1478 aa8.01□□□□□ -1.13
VTI1B-202ENST00000553619 IGF1RP08069 1367 aa8.01□□□□□ -1.13
VTI1B-202ENST00000553619 LOC105371045A0A1W2PR82 267 aa8.01□□□□□ -1.13
VTI1B-202ENST00000553619 UBTFP17480 764 aaKnown RBP8.01□□□□□ -1.13
VTI1B-202ENST00000553619 IRX2Q9BZI1 471 aaPredicted RBP8.01□□□□□ -1.13
VTI1B-202ENST00000553619 CARMIL1Q5VZK9 1371 aa8□□□□□ -1.13
VTI1B-202ENST00000553619 RNF40O75150 1001 aa8□□□□□ -1.13
VTI1B-202ENST00000553619 ARHGEF1Q92888 912 aaKnown RBP8□□□□□ -1.13
VTI1B-202ENST00000553619 TJAP1Q5JTD0 557 aa7.99□□□□□ -1.13
VTI1B-202ENST00000553619 P3H3Q8IVL6 736 aa7.99□□□□□ -1.13
VTI1B-202ENST00000553619 ERICH3Q5RHP9 1530 aa7.98□□□□□ -1.13
VTI1B-202ENST00000553619 AQRO60306 1485 aaKnown RBP eCLIP7.98□□□□□ -1.13
VTI1B-202ENST00000553619 GRIN2BQ13224 1484 aa7.98□□□□□ -1.13
VTI1B-202ENST00000553619 PLCB2Q00722 1185 aa7.97□□□□□ -1.13
VTI1B-202ENST00000553619 MTRQ99707 1265 aa7.97□□□□□ -1.13
VTI1B-202ENST00000553619 GOLGA3Q08378 1498 aa7.97□□□□□ -1.13
VTI1B-202ENST00000553619 KIF21BO75037 1637 aa7.96□□□□□ -1.13
VTI1B-202ENST00000553619 ABCA5Q8WWZ7 1642 aa7.96□□□□□ -1.13
VTI1B-202ENST00000553619 CUL7Q14999 1698 aa7.96□□□□□ -1.13
VTI1B-202ENST00000553619 PRXQ9BXM0 1461 aa7.96□□□□□ -1.13
VTI1B-202ENST00000553619 RAPGEF2Q9Y4G8 1499 aa7.96□□□□□ -1.13
VTI1B-202ENST00000553619 APLP1P51693 650 aa7.96□□□□□ -1.14
VTI1B-202ENST00000553619 SWT1Q5T5J6 900 aaKnown RBP7.96□□□□□ -1.14
VTI1B-202ENST00000553619 TNIKQ9UKE5 1360 aa7.96□□□□□ -1.14
VTI1B-202ENST00000553619 ZNF608Q9ULD9 1512 aaPredicted RBP7.94□□□□□ -1.14
VTI1B-202ENST00000553619 HDGFP51858 240 aaKnown RBP7.94□□□□□ -1.14
VTI1B-202ENST00000553619 CHMP7Q8WUX9 453 aaPredicted RBP7.94□□□□□ -1.14
VTI1B-202ENST00000553619 EYA1Q99502 592 aa7.94□□□□□ -1.14
VTI1B-202ENST00000553619 IL21Q9HBE4 155 aa7.94□□□□□ -1.14
VTI1B-202ENST00000553619 PBRM1Q86U86 1689 aa7.94□□□□□ -1.14
VTI1B-202ENST00000553619 FHAD1B1AJZ9 1412 aa7.94□□□□□ -1.14
VTI1B-202ENST00000553619 PTGDRQ13258 359 aa7.93□□□□□ -1.14
VTI1B-202ENST00000553619 ZNF516Q92618 1163 aa7.93□□□□□ -1.14
VTI1B-202ENST00000553619 MAGI1Q96QZ7 1491 aaPredicted RBP7.93□□□□□ -1.14
VTI1B-202ENST00000553619 HAP1P54257 671 aaPredicted RBP7.92□□□□□ -1.14
VTI1B-202ENST00000553619 SLF2Q8IX21 1173 aa7.92□□□□□ -1.14
VTI1B-202ENST00000553619 EIF4G3O43432 1585 aaKnown RBP7.92□□□□□ -1.14
VTI1B-202ENST00000553619 SNAPC4Q5SXM2 1469 aa7.89□□□□□ -1.15
VTI1B-202ENST00000553619 NUTM2FA1L443 756 aa7.89□□□□□ -1.15
VTI1B-202ENST00000553619 SEMA3EO15041 775 aa7.89□□□□□ -1.15
VTI1B-202ENST00000553619 COPS2P61201 443 aa7.89□□□□□ -1.15
VTI1B-202ENST00000553619 FAM161AQ3B820 660 aa7.89□□□□□ -1.15
VTI1B-202ENST00000553619 PPP1R18Q6NYC8 613 aa7.89□□□□□ -1.15
VTI1B-202ENST00000553619 NKX2-3Q8TAU0 364 aa7.89□□□□□ -1.15
VTI1B-202ENST00000553619 SYNJ2O15056 1496 aa7.88□□□□□ -1.15
VTI1B-202ENST00000553619 NECTIN2Q92692 538 aa7.88□□□□□ -1.15
VTI1B-202ENST00000553619 ADGRG1Q9Y653 693 aa7.88□□□□□ -1.15
VTI1B-202ENST00000553619 DNAJB2P25686 324 aa7.87□□□□□ -1.15
VTI1B-202ENST00000553619 ADAMTS12P58397 1594 aa7.86□□□□□ -1.15
VTI1B-202ENST00000553619 PRKD2Q9BZL6 878 aa7.86□□□□□ -1.15
VTI1B-202ENST00000553619 TMEM134Q9H6X4 195 aa7.86□□□□□ -1.15
VTI1B-202ENST00000553619 SLC4A3P48751 1232 aa7.85□□□□□ -1.15
VTI1B-202ENST00000553619 Q6ZNB5 142 aa7.85□□□□□ -1.15
VTI1B-202ENST00000553619 RBM46Q8TBY0 533 aaKnown RBP7.85□□□□□ -1.15
VTI1B-202ENST00000553619 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.85□□□□□ -1.15
VTI1B-202ENST00000553619 GRIN2AQ12879 1464 aa7.85□□□□□ -1.15
VTI1B-202ENST00000553619 RCCD1A6NED2 376 aa7.84□□□□□ -1.15
VTI1B-202ENST00000553619 FCHSD2O94868 740 aa7.84□□□□□ -1.15
VTI1B-202ENST00000553619 RANGAP1P46060 587 aaPredicted RBP7.84□□□□□ -1.15
VTI1B-202ENST00000553619 CLIP1P30622 1438 aa7.84□□□□□ -1.15
VTI1B-202ENST00000553619 CEP162Q5TB80 1403 aa7.84□□□□□ -1.15
VTI1B-202ENST00000553619 KIAA0586Q9BVV6 1533 aa7.83□□□□□ -1.16
VTI1B-202ENST00000553619 CTTNBP2Q8WZ74 1663 aa7.83□□□□□ -1.16
VTI1B-202ENST00000553619 BLOC1S3Q6QNY0 202 aa7.83□□□□□ -1.16
VTI1B-202ENST00000553619 PCDHB3Q9Y5E6 796 aa7.83□□□□□ -1.16
VTI1B-202ENST00000553619 ZPR1O75312 459 aa7.82□□□□□ -1.16
VTI1B-202ENST00000553619 PRR14Q9BWN1 585 aa7.82□□□□□ -1.16
VTI1B-202ENST00000553619 TESPA1A2RU30 521 aaPredicted RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms