RNA–Protein interactions for RNA: ENST00000410080.5

PRPF40A-202, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PRPF40A, Length 8,048 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-202ENST00000410080 RCAN3Q9UKA8 241 aa13.8□□□□□ -0.2
PRPF40A-202ENST00000410080 FHOD3Q2V2M9 1422 aa13.79□□□□□ -0.2
PRPF40A-202ENST00000410080 ERICH2A1L162 156 aa13.79□□□□□ -0.2
PRPF40A-202ENST00000410080 NEXNQ0ZGT2 675 aa13.79□□□□□ -0.2
PRPF40A-202ENST00000410080 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.79□□□□□ -0.2
PRPF40A-202ENST00000410080 RRP12Q5JTH9 1297 aaKnown RBP13.79□□□□□ -0.2
PRPF40A-202ENST00000410080 TEFQ10587 303 aa13.79□□□□□ -0.2
PRPF40A-202ENST00000410080 LMOD3Q0VAK6 560 aa13.79□□□□□ -0.2
PRPF40A-202ENST00000410080 PLIN1O60240 522 aa13.78□□□□□ -0.2
PRPF40A-202ENST00000410080 LRRFIP1Q32MZ4 808 aaKnown RBP13.78□□□□□ -0.2
PRPF40A-202ENST00000410080 ELL2O00472 640 aaPredicted RBP13.77□□□□□ -0.21
PRPF40A-202ENST00000410080 KDM4AO75164 1064 aa13.77□□□□□ -0.21
PRPF40A-202ENST00000410080 IBSPP21815 317 aaPredicted RBP13.77□□□□□ -0.21
PRPF40A-202ENST00000410080 CYB5RLQ6IPT4 315 aa13.77□□□□□ -0.21
PRPF40A-202ENST00000410080 CCDC47Q96A33 483 aaKnown RBP13.77□□□□□ -0.21
PRPF40A-202ENST00000410080 PPM1FP49593 454 aaPredicted RBP13.76□□□□□ -0.21
PRPF40A-202ENST00000410080 ZNF592Q92610 1267 aa13.76□□□□□ -0.21
PRPF40A-202ENST00000410080 HSP90AB2PQ58FF8 381 aa13.76□□□□□ -0.21
PRPF40A-202ENST00000410080 ATF3P18847 181 aa13.75□□□□□ -0.21
PRPF40A-202ENST00000410080 BECN2A8MW95 431 aa13.75□□□□□ -0.21
PRPF40A-202ENST00000410080 FMN1Q68DA7 1419 aa13.75□□□□□ -0.21
PRPF40A-202ENST00000410080 VPS8Q8N3P4 1428 aa13.75□□□□□ -0.21
PRPF40A-202ENST00000410080 TRDNQ13061 729 aa13.74□□□□□ -0.21
PRPF40A-202ENST00000410080 ANKRD45Q5TZF3 282 aa13.74□□□□□ -0.21
PRPF40A-202ENST00000410080 COG3Q96JB2 828 aa13.74□□□□□ -0.21
PRPF40A-202ENST00000410080 FAM177BA6PVY3 158 aa13.74□□□□□ -0.21
PRPF40A-202ENST00000410080 DIAPH3Q9NSV4 1193 aa13.74□□□□□ -0.21
PRPF40A-202ENST00000410080 RALBP1Q15311 655 aa13.74□□□□□ -0.21
PRPF40A-202ENST00000410080 TCERG1O14776 1098 aaKnown RBP13.73□□□□□ -0.21
PRPF40A-202ENST00000410080 IPO7O95373 1038 aaKnown RBP13.73□□□□□ -0.21
PRPF40A-202ENST00000410080 DEKP35659 375 aaKnown RBP13.73□□□□□ -0.21
PRPF40A-202ENST00000410080 ANO2Q9NQ90 1003 aa13.73□□□□□ -0.21
PRPF40A-202ENST00000410080 ANKRD20A12PQ8NF67 263 aa13.73□□□□□ -0.21
PRPF40A-202ENST00000410080 CPLX1O14810 134 aa13.72□□□□□ -0.21
PRPF40A-202ENST00000410080 BCL11BQ9C0K0 894 aaPredicted RBP13.72□□□□□ -0.21
PRPF40A-202ENST00000410080 GOLGA6L3A6NEY3 463 aa13.71□□□□□ -0.21
PRPF40A-202ENST00000410080 HOOK1Q9UJC3 728 aaKnown RBP13.71□□□□□ -0.21
PRPF40A-202ENST00000410080 CPLX2Q6PUV4 134 aaKnown RBP13.71□□□□□ -0.21
PRPF40A-202ENST00000410080 CCDC18Q5T9S5 1454 aa13.71□□□□□ -0.21
PRPF40A-202ENST00000410080 CENPJQ9HC77 1338 aaPredicted RBP13.7□□□□□ -0.22
PRPF40A-202ENST00000410080 ATP2B2Q01814 1243 aa13.7□□□□□ -0.22
PRPF40A-202ENST00000410080 BCL2L13Q9BXK5 485 aa13.7□□□□□ -0.22
PRPF40A-202ENST00000410080 MINK1Q8N4C8 1332 aaPredicted RBP13.7□□□□□ -0.22
PRPF40A-202ENST00000410080 CCER2I3L3R5 266 aa13.69□□□□□ -0.22
PRPF40A-202ENST00000410080 IFIT2P09913 472 aaKnown RBP13.69□□□□□ -0.22
PRPF40A-202ENST00000410080 AIMP1Q12904 312 aaKnown RBP13.69□□□□□ -0.22
PRPF40A-202ENST00000410080 SKIDA1Q1XH10 827 aa13.69□□□□□ -0.22
PRPF40A-202ENST00000410080 L3MBTL2Q969R5 705 aa13.68□□□□□ -0.22
PRPF40A-202ENST00000410080 CCDC97Q96F63 343 aaPredicted RBP13.68□□□□□ -0.22
PRPF40A-202ENST00000410080 NUTM2GQ5VZR2 741 aa13.68□□□□□ -0.22
PRPF40A-202ENST00000410080 NUTM2BA6NNL0 878 aaPredicted RBP13.67□□□□□ -0.22
PRPF40A-202ENST00000410080 NUTM2EB1AL46 878 aaPredicted RBP13.67□□□□□ -0.22
PRPF40A-202ENST00000410080 NUTM2AQ8IVF1 878 aaPredicted RBP13.67□□□□□ -0.22
PRPF40A-202ENST00000410080 WDR70Q9NW82 654 aa13.67□□□□□ -0.22
PRPF40A-202ENST00000410080 PIP4K2BP78356 416 aa13.67□□□□□ -0.22
PRPF40A-202ENST00000410080 JPH4Q96JJ6 628 aa13.66□□□□□ -0.22
PRPF40A-202ENST00000410080 RUFY1Q96T51 708 aa13.66□□□□□ -0.22
PRPF40A-202ENST00000410080 GPS2Q13227 327 aa13.66□□□□□ -0.22
PRPF40A-202ENST00000410080 DDX58O95786 925 aaKnown RBP13.66□□□□□ -0.22
PRPF40A-202ENST00000410080 RBM5P52756 815 aaKnown RBP eCLIP13.66□□□□□ -0.22
PRPF40A-202ENST00000410080 HOMER1Q86YM7 354 aa13.66□□□□□ -0.22
PRPF40A-202ENST00000410080 PANK3Q9H999 370 aa13.66□□□□□ -0.22
PRPF40A-202ENST00000410080 RAPGEF2Q9Y4G8 1499 aa13.66□□□□□ -0.22
PRPF40A-202ENST00000410080 NEUROD6Q96NK8 337 aa13.65□□□□□ -0.22
PRPF40A-202ENST00000410080 CALRP27797 417 aaKnown RBP13.65□□□□□ -0.22
PRPF40A-202ENST00000410080 TOP2AP11388 1531 aaKnown RBP13.65□□□□□ -0.22
PRPF40A-202ENST00000410080 SPDYE4A6NLX3 237 aa13.65□□□□□ -0.22
PRPF40A-202ENST00000410080 RIC3Q7Z5B4 369 aa13.65□□□□□ -0.22
PRPF40A-202ENST00000410080 RBM19Q9Y4C8 960 aaKnown RBP13.64□□□□□ -0.23
PRPF40A-202ENST00000410080 TTLL5Q6EMB2 1281 aa13.64□□□□□ -0.23
PRPF40A-202ENST00000410080 STK11IPQ8N1F8 1099 aa13.64□□□□□ -0.23
PRPF40A-202ENST00000410080 CHMP4CQ96CF2 233 aa13.64□□□□□ -0.23
PRPF40A-202ENST00000410080 CCDC144AA2RUR9 1427 aa13.64□□□□□ -0.23
PRPF40A-202ENST00000410080 G3BP1Q13283 466 aaKnown RBP eCLIP13.63□□□□□ -0.236e-8■□□□□ 11.3
PRPF40A-202ENST00000410080 WASHC4Q2M389 1173 aa13.63□□□□□ -0.23
PRPF40A-202ENST00000410080 PAXIP1Q6ZW49 1069 aaPredicted RBP13.63□□□□□ -0.23
PRPF40A-202ENST00000410080 RUFY2Q8WXA3 655 aa13.63□□□□□ -0.23
PRPF40A-202ENST00000410080 STRN4Q9NRL3 753 aa13.63□□□□□ -0.23
PRPF40A-202ENST00000410080 WASHC2AQ641Q2 1341 aa13.63□□□□□ -0.23
PRPF40A-202ENST00000410080 BICD2Q8TD16 824 aa13.63□□□□□ -0.23
PRPF40A-202ENST00000410080 BRMS1Q9HCU9 246 aa13.63□□□□□ -0.23
PRPF40A-202ENST00000410080 MYCNP04198 464 aaPredicted RBP13.63□□□□□ -0.23
PRPF40A-202ENST00000410080 KIF6Q6ZMV9 814 aa13.63□□□□□ -0.23
PRPF40A-202ENST00000410080 OFD1O75665 1012 aa13.62□□□□□ -0.23
PRPF40A-202ENST00000410080 SAFBQ15424 915 aaKnown RBP eCLIP13.62□□□□□ -0.23
PRPF40A-202ENST00000410080 ATP6V1DQ9Y5K8 247 aa13.62□□□□□ -0.23
PRPF40A-202ENST00000410080 MATR3P43243 847 aaKnown RBP eCLIP13.62□□□□□ -0.23
PRPF40A-202ENST00000410080 ZNF428Q96B54 188 aa13.62□□□□□ -0.23
PRPF40A-202ENST00000410080 CHMP4BP1P59074 171 aa13.61□□□□□ -0.23
PRPF40A-202ENST00000410080 ZKSCAN1P17029 563 aaPredicted RBP13.61□□□□□ -0.23
PRPF40A-202ENST00000410080 ST20-MTHFSA0A0A6YYL1 179 aa13.6□□□□□ -0.23
PRPF40A-202ENST00000410080 CDK5RAP3Q96JB5 506 aa13.6□□□□□ -0.23
PRPF40A-202ENST00000410080 RDXP35241 583 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-202ENST00000410080 AK7Q96M32 723 aa13.6□□□□□ -0.23
PRPF40A-202ENST00000410080 TIMELESSQ9UNS1 1208 aa13.6□□□□□ -0.23
PRPF40A-202ENST00000410080 SYCP1Q15431 976 aa13.6□□□□□ -0.23
PRPF40A-202ENST00000410080 RALYLQ86SE5 291 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-202ENST00000410080 RAPGEF4Q8WZA2 1011 aa13.6□□□□□ -0.23
PRPF40A-202ENST00000410080 EVC2Q86UK5 1308 aa13.59□□□□□ -0.23
PRPF40A-202ENST00000410080 CGNL1Q0VF96 1302 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 471.4 ms