RNA–Protein interactions for RNA: ENSMUST00000131537.8

Lig3-204, Transcript of DNA ligase 3, mousemouse

TSL 1 (best) BASIC

Gene Lig3, Length 1,782 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3-204ENSMUST00000131537 Chd2E9PZM4 1827 aaKnown RBP28.58■■■□□ 2.17
Lig3-204ENSMUST00000131537 Mroh1E0CZ22 1640 aa28.57■■■□□ 2.16
Lig3-204ENSMUST00000131537 Cyb5rlB1AS42 316 aa28.57■■■□□ 2.16
Lig3-204ENSMUST00000131537 Txndc2Q6P902 515 aa28.55■■■□□ 2.16
Lig3-204ENSMUST00000131537 Grwd1Q810D6 446 aaKnown RBP28.55■■■□□ 2.16
Lig3-204ENSMUST00000131537 P3h3Q8CG70 732 aa28.55■■■□□ 2.16
Lig3-204ENSMUST00000131537 AU022751B1B0V2 589 aa28.53■■■□□ 2.16
Lig3-204ENSMUST00000131537 Ifit1bl1D3Z6F0 470 aa28.52■■■□□ 2.16
Lig3-204ENSMUST00000131537 Kdm5aQ3UXZ9 1690 aa28.5■■■□□ 2.15
Lig3-204ENSMUST00000131537 Adamts13Q769J6 1426 aa28.5■■■□□ 2.15
Lig3-204ENSMUST00000131537 Arid4bA2CG63 1314 aaKnown RBP28.49■■■□□ 2.15
Lig3-204ENSMUST00000131537 Psme1P97371 249 aa28.48■■■□□ 2.15
Lig3-204ENSMUST00000131537 Tulp4Q9JIL5 1547 aa28.47■■■□□ 2.15
Lig3-204ENSMUST00000131537 Atp1b4Q99ME6 356 aa28.44■■■□□ 2.14
Lig3-204ENSMUST00000131537 Kdm2aP59997 1161 aa28.43■■■□□ 2.14
Lig3-204ENSMUST00000131537 Rpgrip1Q9EPQ2 1331 aa28.43■■■□□ 2.14
Lig3-204ENSMUST00000131537 Ppargc1bQ8VHJ7 1014 aa28.42■■■□□ 2.14
Lig3-204ENSMUST00000131537 Gm13695A2AK44 830 aa28.41■■■□□ 2.14
Lig3-204ENSMUST00000131537 Las1lA2BE28 776 aaKnown RBP28.38■■■□□ 2.13
Lig3-204ENSMUST00000131537 Rims1Q99NE5 1463 aa28.38■■■□□ 2.13
Lig3-204ENSMUST00000131537 Polr3aB2RXC6 1390 aa28.37■■■□□ 2.13
Lig3-204ENSMUST00000131537 Os9Q8K2C7 672 aa28.37■■■□□ 2.13
Lig3-204ENSMUST00000131537 Dip2aQ8BWT5 1523 aa28.36■■■□□ 2.13
Lig3-204ENSMUST00000131537 Gemin5Q8BX17 1502 aaKnown RBP28.36■■■□□ 2.13
Lig3-204ENSMUST00000131537 Scaf11E9PZM7 1456 aaKnown RBP28.36■■■□□ 2.13
Lig3-204ENSMUST00000131537 Iqgap1Q9JKF1 1657 aaKnown RBP28.35■■■□□ 2.13
Lig3-204ENSMUST00000131537 Shq1Q7TMX5 569 aa28.34■■■□□ 2.13
Lig3-204ENSMUST00000131537 Rimbp3Q3V0F0 1606 aa28.34■■■□□ 2.13
Lig3-204ENSMUST00000131537 IghaA0A0A6YXW6 389 aa28.34■■■□□ 2.13
Lig3-204ENSMUST00000131537 Srpk2O54781 681 aaKnown RBP28.34■■■□□ 2.13
Lig3-204ENSMUST00000131537 Plxnc1Q9QZC2 1574 aa28.34■■■□□ 2.13
Lig3-204ENSMUST00000131537 Gm20521D3Z5F7 333 aa28.32■■■□□ 2.12
Lig3-204ENSMUST00000131537 PplQ9R269 1755 aa28.32■■■□□ 2.12
Lig3-204ENSMUST00000131537 Zc3h13E9Q784 1729 aaKnown RBP28.32■■■□□ 2.12
Lig3-204ENSMUST00000131537 Cpsf1Q9EPU4 1441 aaKnown RBP28.32■■■□□ 2.12
Lig3-204ENSMUST00000131537 Q9D9H8 365 aa28.32■■■□□ 2.12
Lig3-204ENSMUST00000131537 Fan1Q69ZT1 1020 aa28.31■■■□□ 2.12
Lig3-204ENSMUST00000131537 Asxl2Q8BZ32 1370 aa28.31■■■□□ 2.12
Lig3-204ENSMUST00000131537 Mbd5B1AYB6 1498 aa28.31■■■□□ 2.12
Lig3-204ENSMUST00000131537 Mug2P28666 1451 aa28.31■■■□□ 2.12
Lig3-204ENSMUST00000131537 Myom1Q62234 1667 aaKnown RBP28.3■■■□□ 2.12
Lig3-204ENSMUST00000131537 Myo3aQ8K3H5 1613 aa28.29■■■□□ 2.12
Lig3-204ENSMUST00000131537 Scn4aQ9ER60 1841 aa28.29■■■□□ 2.12
Lig3-204ENSMUST00000131537 Cdk13Q69ZA1 1511 aaKnown RBP28.29■■■□□ 2.12
Lig3-204ENSMUST00000131537 Pip4k2bQ80XI4 416 aa28.28■■■□□ 2.12
Lig3-204ENSMUST00000131537 Slc52a2Q9D8F3 450 aa28.27■■■□□ 2.12
Lig3-204ENSMUST00000131537 PalldQ9ET54 1408 aa28.24■■■□□ 2.11
Lig3-204ENSMUST00000131537 Cep152A2AUM9 1736 aaKnown RBP28.24■■■□□ 2.11
Lig3-204ENSMUST00000131537 Dapk1Q80YE7 1442 aa28.23■■■□□ 2.11
Lig3-204ENSMUST00000131537 Rims2Q9EQZ7 1530 aa28.23■■■□□ 2.11
Lig3-204ENSMUST00000131537 Arhgef28P97433 1693 aa28.23■■■□□ 2.11
Lig3-204ENSMUST00000131537 Rundc1Q0VDN7 615 aa28.23■■■□□ 2.11
Lig3-204ENSMUST00000131537 Puf60Q3UEB3 564 aaKnown RBP28.23■■■□□ 2.11
Lig3-204ENSMUST00000131537 Eif2ak4Q9QZ05 1648 aa28.22■■■□□ 2.11
Lig3-204ENSMUST00000131537 Ncoa1P70365 1447 aa28.22■■■□□ 2.11
Lig3-204ENSMUST00000131537 Phlpp1Q8CHE4 1687 aa28.18■■■□□ 2.1
Lig3-204ENSMUST00000131537 Card11Q8CIS0 1159 aa28.16■■■□□ 2.1
Lig3-204ENSMUST00000131537 Stk26Q99JT2 416 aa28.16■■■□□ 2.1
Lig3-204ENSMUST00000131537 Slit3Q9WVB4 1523 aa28.16■■■□□ 2.1
Lig3-204ENSMUST00000131537 Setd1aE9PYH6 1716 aa28.15■■■□□ 2.1
Lig3-204ENSMUST00000131537 Lmtk3Q5XJV6 1424 aa28.14■■■□□ 2.1
Lig3-204ENSMUST00000131537 Cdk5rap2Q8K389 1822 aa28.12■■■□□ 2.09
Lig3-204ENSMUST00000131537 Usp40Q8BWR4 1235 aa28.12■■■□□ 2.09
Lig3-204ENSMUST00000131537 PzpQ61838 1495 aa28.12■■■□□ 2.09
Lig3-204ENSMUST00000131537 Ltbp4Q8K4G1 1666 aa28.12■■■□□ 2.09
Lig3-204ENSMUST00000131537 Rapgef3Q8VCC8 918 aa28.11■■■□□ 2.09
Lig3-204ENSMUST00000131537 Lrrc7Q80TE7 1490 aa28.09■■■□□ 2.09
Lig3-204ENSMUST00000131537 Zbtb4Q5F293 982 aa28.09■■■□□ 2.09
Lig3-204ENSMUST00000131537 Utp14aQ640M1 767 aaKnown RBP28.08■■■□□ 2.09
Lig3-204ENSMUST00000131537 RalgapbQ8BQZ4 1484 aa28.07■■■□□ 2.08
Lig3-204ENSMUST00000131537 Nrxn3Q6P9K9 1571 aa28.06■■■□□ 2.08
Lig3-204ENSMUST00000131537 IqubQ8CDK3 788 aa28.04■■■□□ 2.08
Lig3-204ENSMUST00000131537 Gtf2e1Q9D0D5 440 aa28.04■■■□□ 2.08
Lig3-204ENSMUST00000131537 HnrnpmQ9D0E1 729 aaKnown RBP28.04■■■□□ 2.08
Lig3-204ENSMUST00000131537 Stag3O70576 1240 aa28.04■■■□□ 2.08
Lig3-204ENSMUST00000131537 Pik3r4Q8VD65 1358 aa28.03■■■□□ 2.08
Lig3-204ENSMUST00000131537 MaddQ80U28 1577 aa28.03■■■□□ 2.08
Lig3-204ENSMUST00000131537 Srcin1Q9QWI6 1250 aa28.02■■■□□ 2.08
Lig3-204ENSMUST00000131537 Med1Q925J9 1575 aa28.01■■■□□ 2.07
Lig3-204ENSMUST00000131537 Sin3aQ60520 1274 aaKnown RBP28■■■□□ 2.07
Lig3-204ENSMUST00000131537 Stard8Q8K031 1019 aa27.99■■■□□ 2.07
Lig3-204ENSMUST00000131537 Nphp4P59240 1425 aa27.99■■■□□ 2.07
Lig3-204ENSMUST00000131537 Sipa1l1Q8C0T5 1782 aa27.97■■■□□ 2.07
Lig3-204ENSMUST00000131537 Cep170bQ80U49 1574 aa27.95■■■□□ 2.07
Lig3-204ENSMUST00000131537 Rock2P70336 1388 aa27.95■■■□□ 2.06
Lig3-204ENSMUST00000131537 Aebp2Q9Z248 504 aaKnown RBP27.93■■■□□ 2.06
Lig3-204ENSMUST00000131537 Arap3Q8R5G7 1538 aa27.92■■■□□ 2.06
Lig3-204ENSMUST00000131537 DnmbpQ6TXD4 1580 aa27.92■■■□□ 2.06
Lig3-204ENSMUST00000131537 Plekhg1F6S200 1446 aa27.89■■■□□ 2.06
Lig3-204ENSMUST00000131537 Thsd7aQ69ZU6 1645 aa27.89■■■□□ 2.06
Lig3-204ENSMUST00000131537 Cwc22Q8C5N3 908 aaKnown RBP27.88■■■□□ 2.05
Lig3-204ENSMUST00000131537 Cps1Q8C196 1500 aa27.87■■■□□ 2.05
Lig3-204ENSMUST00000131537 Tubgcp6G5E8P0 1769 aa27.87■■■□□ 2.05
Lig3-204ENSMUST00000131537 Mink1Q9JM52 1308 aa27.86■■■□□ 2.05
Lig3-204ENSMUST00000131537 Atp2b2Q9R0K7 1198 aa27.85■■■□□ 2.05
Lig3-204ENSMUST00000131537 Tns3Q5SSZ5 1440 aa27.85■■■□□ 2.05
Lig3-204ENSMUST00000131537 Ift172Q6VH22 1749 aa27.83■■■□□ 2.05
Lig3-204ENSMUST00000131537 Tmem94Q7TSH8 1360 aa27.82■■■□□ 2.04
Lig3-204ENSMUST00000131537 Wdr66E9Q743 1299 aa27.81■■■□□ 2.04
Lig3-204ENSMUST00000131537 Q3UJC8 639 aa27.79■■■□□ 2.04
Retrieved 100 of 22,080 RNA–protein pairs in 11.8 ms