RNA–Protein interactions for RNA: ENSMUST00000053440.7

Ccdc40-202, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ccdc40, Length 3,524 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-202ENSMUST00000053440 Rrbp1Q99PL5 1605 aaKnown RBP12.79□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Kif7B7ZNG0 1348 aa12.79□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Gm20521D3Z5F7 333 aa12.79□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Kdm2bQ6P1G2 1309 aa12.78□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Gm16486A0A1D5RMD1 1434 aa12.78□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Dcaf11Q91VU6 549 aa12.78□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Plekhh1Q80TI1 1356 aa12.78□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 AI481877A2ALV5 1481 aa12.78□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Tulp4Q9JIL5 1547 aa12.78□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Nkx1-2P42580 305 aa12.78□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Cnga1P29974 684 aa12.77□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Stk24Q99KH8 431 aa12.77□□□□□ -0.36
Ccdc40-202ENSMUST00000053440 Ppip5k1A2ARP1 1436 aa12.77□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Ccdc30Q8BVF4 654 aa12.77□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Mast1Q9R1L5 1570 aa12.77□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Arid4bA2CG63 1314 aaKnown RBP12.76□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 ArxO35085 564 aa12.76□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 4930567H17RikQ3V0K5 233 aa12.76□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Fgd6Q69ZL1 1399 aa12.76□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 NudcO35685 332 aaKnown RBP12.75□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Sbno1Q689Z5 1390 aa12.75□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Gm14025A2AP89 1413 aa12.75□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Trim30dE9PWL0 497 aa12.75□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Fan1Q69ZT1 1020 aa12.75□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Cep170Q6A065 1588 aa12.74□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Prdm16A2A935 1275 aa12.74□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Tspyl2Q7TQI8 677 aa12.74□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Dnai1Q8C0M8 701 aa12.74□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Rnf17Q99MV7 1640 aa12.74□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Kif3bQ61771 747 aa12.74□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Cdc42bpbQ7TT50 1713 aa12.74□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Gas2l2Q5SSG4 860 aa12.73□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Gtf2e1Q9D0D5 440 aa12.73□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Nsd2Q8BVE8 1365 aa12.73□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Abcc6Q9R1S7 1498 aa12.72□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Polr3glQ8R0C0 218 aa12.72□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Ccdc9Q8VC31 543 aaKnown RBP12.72□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Golga2Q921M4 999 aa12.72□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Ttc41Q692V3 1318 aa12.72□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Srpk2O54781 681 aaKnown RBP12.72□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Usp40Q8BWR4 1235 aa12.72□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Cfap74Q3UY96 1578 aa12.72□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Irx3P81067 507 aa12.71□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Gtf3c3Q3TMP1 882 aa12.71□□□□□ -0.37
Ccdc40-202ENSMUST00000053440 Usp54Q8BL06 1588 aaKnown RBP12.71□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Smc5Q8CG46 1101 aaKnown RBP12.71□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Pank1Q8K4K6 548 aa12.71□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Armcx1Q9CX83 456 aa12.71□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Usp19Q3UJD6 1360 aa12.7□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Eif2s2Q99L45 331 aaKnown RBP12.7□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Robo2Q7TPD3 1470 aa12.7□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Atf7ipQ7TT18 1306 aa12.7□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Trim26Q99PN3 545 aa12.69□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Atp10dQ8K2X1 1416 aa12.69□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Pdcd11Q6NS46 1862 aaKnown RBP12.68□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Kif1bQ60575 1816 aaKnown RBP12.68□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Ak7Q9D2H2 614 aa12.68□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Hsp90ab1P11499 724 aaKnown RBP12.68□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Abcc3B2RX12 1523 aa12.67□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Clasp1Q80TV8 1535 aaKnown RBP12.67□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 ShprhQ7TPQ3 1674 aa12.67□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Ppm1gQ61074 542 aa12.67□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Col17a1Q07563 1470 aa12.67□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Atxn3Q9CVD2 355 aa12.67□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Neurl4Q5NCX5 1563 aa12.66□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Znf608Q56A10 1511 aa12.66□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Mapk8ip3Q9ESN9 1337 aa12.66□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Hecw1Q8K4P8 1604 aa12.65□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Pola1P33609 1465 aa12.65□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 ErbinQ80TH2 1402 aa12.65□□□□□ -0.38
Ccdc40-202ENSMUST00000053440 Mre11Q61216 706 aa12.65□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Kiaa1107Q80TK0 1369 aa12.64□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Ipo8Q7TMY7 1010 aa12.64□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Amer1Q7TS75 1132 aa12.64□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Arid3cA6PWV5 409 aa12.63□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Ylpm1Q9R0I7 1386 aaKnown RBP12.63□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Ttc21bQ0HA38 1315 aa12.63□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Plcd4Q8K3R3 807 aa12.63□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 NhsB1AV60 1647 aa12.63□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Uspl1Q3ULM6 1089 aa12.63□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Rangap1P46061 589 aaKnown RBP12.62□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Ccdc183A2AJB1 534 aa12.62□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Ralbp1Q62172 648 aa12.62□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Kdm5aQ3UXZ9 1690 aa12.62□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Rlbp1Q9Z275 317 aa12.61□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Puf60Q3UEB3 564 aaKnown RBP12.61□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Itsn2Q9Z0R6 1659 aa12.6□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Abcc1O35379 1528 aa12.6□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Kidins220E9Q9B7 1793 aa12.6□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Myo3aQ8K3H5 1613 aa12.6□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Xrn1P97789 1719 aaKnown RBP12.6□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Uggt2E9Q4X2 1504 aa12.6□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Gm6268A2A3U9 297 aa12.6□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Stag3O70576 1240 aa12.6□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Apaf1O88879 1249 aa12.59□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 KarsQ99MN1 595 aaKnown RBP12.59□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 AnkarA2RT91 1465 aa12.59□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Ecm2Q5FW85 670 aa12.59□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Abca8bQ8K440 1620 aa12.59□□□□□ -0.39
Ccdc40-202ENSMUST00000053440 Duxf3A0A0N4SV92 674 aa12.58□□□□□ -0.4
Retrieved 100 of 22,080 RNA–protein pairs in 13.1 ms