RNA–Protein interactions for RNA: snR54

snR54, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR54, Length 86 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR54snR54 YDR248CQ03786 193 aa0.45□□□□□ -2.34
snR54snR54 DRS2P39524 1355 aa0.45□□□□□ -2.34
snR54snR54 CDC10P25342 322 aaKnown RBP0.44□□□□□ -2.34
snR54snR54 RTT105P40063 208 aa0.44□□□□□ -2.34
snR54snR54 DID2P69771 204 aa0.44□□□□□ -2.34
snR54snR54 SWP1Q02795 286 aa0.44□□□□□ -2.34
snR54snR54 KAP95Q06142 861 aaKnown RBP0.44□□□□□ -2.34
snR54snR54 YBR209WP38311 105 aa0.43□□□□□ -2.34
snR54snR54 NSA1P53136 463 aaPredicted RBP0.43□□□□□ -2.34
snR54snR54 FSF1Q12029 327 aaKnown RBP0.43□□□□□ -2.34
snR54snR54 ATG31Q12421 196 aa0.43□□□□□ -2.34
snR54snR54 TSC3Q3E790 80 aa0.43□□□□□ -2.34
snR54snR54 TIM9O74700 87 aa0.42□□□□□ -2.34
snR54snR54 RIB7P33312 244 aa0.42□□□□□ -2.34
snR54snR54 SNC2P33328 115 aa0.42□□□□□ -2.34
snR54snR54 NTF2P33331 125 aaKnown RBP0.42□□□□□ -2.34
snR54snR54 MRPL28P36527 147 aa0.42□□□□□ -2.34
snR54snR54 YAE1P47118 141 aaPredicted RBP0.42□□□□□ -2.34
snR54snR54 YNL134CP53912 376 aaKnown RBP0.42□□□□□ -2.34
snR54snR54 PAM18Q07914 168 aa0.42□□□□□ -2.34
snR54snR54 YLR236CA0A023PZG4 107 aa0.41□□□□□ -2.34
snR54snR54 SIP3P38717 1229 aa0.41□□□□□ -2.34
snR54snR54 GVP36P40531 326 aaKnown RBP0.41□□□□□ -2.34
snR54snR54 YFL065CP43539 102 aa0.41□□□□□ -2.34
snR54snR54 ARO8P53090 500 aaKnown RBP0.41□□□□□ -2.34
snR54snR54 LSO2Q3E772 92 aaKnown RBP0.41□□□□□ -2.34
snR54snR54 TDA8Q6B2U8 126 aa0.41□□□□□ -2.34
snR54snR54 ATG40Q99325 256 aa0.41□□□□□ -2.34
snR54snR54 BCY1P07278 416 aaKnown RBP0.4□□□□□ -2.35
snR54snR54 OPY1P38271 328 aa0.4□□□□□ -2.35
snR54snR54 CUE1P38428 203 aa0.4□□□□□ -2.35
snR54snR54 VMA22P38784 181 aa0.4□□□□□ -2.35
snR54snR54 PRE6P40303 254 aaKnown RBP0.4□□□□□ -2.35
snR54snR54 FLX1P40464 311 aa0.4□□□□□ -2.35
snR54snR54 YML108WQ03759 105 aa0.4□□□□□ -2.35
snR54snR54 GPM2Q12008 311 aa0.4□□□□□ -2.35
snR54snR54 MCP1Q12106 302 aa0.4□□□□□ -2.35
snR54snR54 MRPL25P23369 157 aa0.39□□□□□ -2.35
snR54snR54 MRPL50P53724 139 aa0.39□□□□□ -2.35
snR54snR54 RCE1Q03530 315 aa0.39□□□□□ -2.35
snR54snR54 KRE28Q04431 385 aa0.39□□□□□ -2.35
snR54snR54 RRT8Q08219 342 aa0.39□□□□□ -2.35
snR54snR54 RAD28Q12021 506 aa0.39□□□□□ -2.35
snR54snR54 RRP36Q12481 300 aaPredicted RBP0.39□□□□□ -2.35
snR54snR54 SEC11P15367 167 aa0.38□□□□□ -2.35
snR54snR54 RPO26P20435 155 aa0.38□□□□□ -2.35
snR54snR54 SEC17P32602 292 aa0.38□□□□□ -2.35
snR54snR54 UTP30P36144 274 aaKnown RBP0.38□□□□□ -2.35
snR54snR54 LDB7P38210 180 aa0.38□□□□□ -2.35
snR54snR54 EDC3P39998 551 aaKnown RBP0.38□□□□□ -2.35
snR54snR54 PRM8P53174 237 aa0.38□□□□□ -2.35
snR54snR54 YNL247WP53852 767 aaKnown RBP0.38□□□□□ -2.35
snR54snR54 YOL160WQ08321 113 aa0.38□□□□□ -2.35
snR54snR54 CWC27Q02770 301 aa0.37□□□□□ -2.35
snR54snR54 YLR173WQ06247 608 aa0.37□□□□□ -2.35
snR54snR54 CDC28P00546 298 aaKnown RBP0.36□□□□□ -2.35
snR54snR54 SPT3P06844 337 aa0.36□□□□□ -2.35
snR54snR54 URA6P15700 204 aa0.36□□□□□ -2.35
snR54snR54 YBR285WP38354 144 aa0.36□□□□□ -2.35
snR54snR54 CUE4Q04201 117 aaPredicted RBP0.36□□□□□ -2.35
snR54snR54 DBF2P22204 572 aa0.35□□□□□ -2.35
snR54snR54 YUH1P35127 236 aa0.35□□□□□ -2.35
snR54snR54 SHE2P36068 246 aaKnown RBP RIP-Chip data0.35□□□□□ -2.35not detected
snR54snR54 SKG1P36169 355 aa0.35□□□□□ -2.35
snR54snR54 YHL042WP38729 150 aa0.35□□□□□ -2.35
snR54snR54 LIA1P47120 325 aaKnown RBP0.35□□□□□ -2.35
snR54snR54 YDR274CP87283 123 aa0.35□□□□□ -2.35
snR54snR54 YHR007C-AQ07074 71 aa0.35□□□□□ -2.35
snR54snR54 YCL042WP25572 119 aa0.34□□□□□ -2.36
snR54snR54 TCA17P32613 152 aa0.34□□□□□ -2.36
snR54snR54 HYR1P40581 163 aaKnown RBP0.34□□□□□ -2.36
snR54snR54 NUP84P52891 726 aa0.34□□□□□ -2.36
snR54snR54 YPL073CP40323 161 aa0.33□□□□□ -2.36
snR54snR54 YFH7P43591 353 aa0.33□□□□□ -2.36
snR54snR54 YMR252CQ04814 134 aa0.33□□□□□ -2.36
snR54snR54 MATALPHA1P0CY06 175 aa0.32□□□□□ -2.36
snR54snR54 HMLALPHA1P0CY07 175 aa0.32□□□□□ -2.36
snR54snR54 APS1P35181 156 aa0.32□□□□□ -2.36
snR54snR54 YEL008WP40001 126 aa0.32□□□□□ -2.36
snR54snR54 ALG13P53178 202 aa0.32□□□□□ -2.36
snR54snR54 SRL4Q03085 281 aa0.32□□□□□ -2.36
snR54snR54 CDC123Q05791 360 aa0.32□□□□□ -2.36
snR54snR54 LCL2Q08045 131 aa0.32□□□□□ -2.36
snR54snR54 YRA1Q12159 226 aaKnown RBP0.32□□□□□ -2.36
snR54snR54 CFT1Q06632 1357 aaKnown RBP0.32□□□□□ -2.36
snR54snR54 RPL27AP0C2H6 136 aaKnown RBP0.31□□□□□ -2.36
snR54snR54 MGM101P32787 269 aaKnown RBP0.31□□□□□ -2.36
snR54snR54 YER034WP40022 185 aaKnown RBP0.31□□□□□ -2.36
snR54snR54 FAR7P43592 221 aa0.31□□□□□ -2.36
snR54snR54 BXI1P48558 297 aa0.31□□□□□ -2.36
snR54snR54 FYV6P53913 173 aa0.31□□□□□ -2.36
snR54snR54 DIG2Q03373 323 aaKnown RBP0.31□□□□□ -2.36
snR54snR54 YDR249CQ03787 373 aa0.31□□□□□ -2.36
snR54snR54 YFR032C-BQ8TGU2 87 aa0.31□□□□□ -2.36
snR54snR54 MDM35O60200 86 aa0.3□□□□□ -2.36
snR54snR54 ATP15P21306 62 aa0.3□□□□□ -2.36
snR54snR54 BET1P22804 142 aa0.3□□□□□ -2.36
snR54snR54 IDH1P28834 360 aaKnown RBP RIP-Chip data0.3□□□□□ -2.36not detected
snR54snR54 RPC17P47076 161 aa0.3□□□□□ -2.36
snR54snR54 BRR6P53062 197 aa0.3□□□□□ -2.36
Retrieved 100 of 5,963 RNA–protein pairs in 26.2 ms