RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C GEP3Q08622 556 aa3.99□□□□□ -1.77
EAR1YMR171C SCP1Q08873 200 aa3.99□□□□□ -1.77
EAR1YMR171C YDR262WQ12331 272 aa3.99□□□□□ -1.77
EAR1YMR171C CYR1P08678 2026 aaKnown RBP3.99□□□□□ -1.77
EAR1YMR171C CTA1P15202 515 aa3.98□□□□□ -1.77
EAR1YMR171C ELO2P25358 347 aa3.98□□□□□ -1.77
EAR1YMR171C RFA3P26755 122 aaKnown RBP3.98□□□□□ -1.77
EAR1YMR171C YBL010CP32788 280 aa3.98□□□□□ -1.77
EAR1YMR171C MRPL4P36517 319 aa3.98□□□□□ -1.77
EAR1YMR171C RIB5P38145 238 aa3.98□□□□□ -1.77
EAR1YMR171C ATG8P38182 117 aaRIP-Chip data3.98□□□□□ -1.77not detected
EAR1YMR171C ERJ5P43613 295 aaPredicted RBP3.98□□□□□ -1.77
EAR1YMR171C ADO1P47143 340 aaKnown RBP3.98□□□□□ -1.77
EAR1YMR171C BRR6P53062 197 aa3.98□□□□□ -1.77
EAR1YMR171C ALG9P53868 555 aaKnown RBP3.98□□□□□ -1.77
EAR1YMR171C SAM50P53969 484 aa3.98□□□□□ -1.77
EAR1YMR171C MRPS17Q03246 237 aaPredicted RBP3.98□□□□□ -1.77
EAR1YMR171C ERP1Q05359 219 aaKnown RBP3.98□□□□□ -1.77
EAR1YMR171C NNT1Q05874 261 aa3.98□□□□□ -1.77
EAR1YMR171C YPR174CQ06616 221 aaPredicted RBP3.98□□□□□ -1.77
EAR1YMR171C HEM25Q07534 307 aa3.98□□□□□ -1.77
EAR1YMR171C BSC6Q08280 497 aa3.98□□□□□ -1.77
EAR1YMR171C MCP1Q12106 302 aa3.98□□□□□ -1.77
EAR1YMR171C MCT1Q12283 360 aa3.98□□□□□ -1.77
EAR1YMR171C YSF3P0C074 85 aaPredicted RBP3.97□□□□□ -1.77
EAR1YMR171C MEK1P24719 497 aaPredicted RBP3.97□□□□□ -1.77
EAR1YMR171C RML2P32611 393 aa3.97□□□□□ -1.77
EAR1YMR171C SEN34P39707 275 aa3.97□□□□□ -1.77
EAR1YMR171C AGX1P43567 385 aa3.97□□□□□ -1.77
EAR1YMR171C YJR056CP47115 236 aa3.97□□□□□ -1.77
EAR1YMR171C SOL1P50278 321 aa3.97□□□□□ -1.77
EAR1YMR171C RMD9P53140 646 aaKnown RBP3.97□□□□□ -1.77
EAR1YMR171C AAH1P53909 347 aa3.97□□□□□ -1.77
EAR1YMR171C GPI15P53961 229 aa3.97□□□□□ -1.77
EAR1YMR171C YLR460CP54007 376 aa3.97□□□□□ -1.77
EAR1YMR171C PET191Q02772 108 aa3.97□□□□□ -1.77
EAR1YMR171C RTT103Q05543 409 aa3.97□□□□□ -1.77
EAR1YMR171C IRC19Q07843 230 aa3.97□□□□□ -1.77
EAR1YMR171C NCE102Q12207 173 aaRIP-Chip data3.97□□□□□ -1.77not detected
EAR1YMR171C DGK1Q12382 290 aa3.97□□□□□ -1.77
EAR1YMR171C TOR2P32600 2474 aaKnown RBP3.97□□□□□ -1.77
EAR1YMR171C OPI3P05375 206 aa3.97□□□□□ -1.77
EAR1YMR171C ADH3P07246 375 aaKnown RBP3.97□□□□□ -1.77
EAR1YMR171C QCR2P07257 368 aa3.97□□□□□ -1.77
EAR1YMR171C SGA1P08019 549 aa3.97□□□□□ -1.77
EAR1YMR171C RPL1AP0CX43 217 aaKnown RBP3.97□□□□□ -1.77
EAR1YMR171C RPL1BP0CX44 217 aaKnown RBP3.97□□□□□ -1.77
EAR1YMR171C GLK1P17709 500 aaKnown RBP3.97□□□□□ -1.77
EAR1YMR171C SEC59P20048 519 aa3.97□□□□□ -1.77
EAR1YMR171C UMP1P38293 148 aa3.97□□□□□ -1.77
EAR1YMR171C YEA6P39953 335 aa3.97□□□□□ -1.77
EAR1YMR171C SPC25P40014 221 aa3.97□□□□□ -1.77
EAR1YMR171C VMA21P41806 77 aa3.97□□□□□ -1.77
EAR1YMR171C TIM21P53220 239 aa3.97□□□□□ -1.77
EAR1YMR171C YGR126WP53274 230 aa3.97□□□□□ -1.77
EAR1YMR171C MPA43P53583 542 aaPredicted RBP3.97□□□□□ -1.77
EAR1YMR171C SMM1P53720 384 aaKnown RBP3.97□□□□□ -1.77
EAR1YMR171C DUG3P53871 357 aa3.97□□□□□ -1.77
EAR1YMR171C EST3Q03096 181 aa3.97□□□□□ -1.77
EAR1YMR171C YPR063CQ12160 140 aa3.97□□□□□ -1.77
EAR1YMR171C YCT1Q12235 531 aa3.97□□□□□ -1.77
EAR1YMR171C MED4Q12343 284 aa3.97□□□□□ -1.77
EAR1YMR171C ERP4Q12450 207 aa3.97□□□□□ -1.77
EAR1YMR171C COX19Q3E731 98 aa3.97□□□□□ -1.77
EAR1YMR171C UBA3Q99344 299 aa3.97□□□□□ -1.77
EAR1YMR171C PPA2P28239 310 aa3.96□□□□□ -1.78
EAR1YMR171C FRM2P37261 193 aa3.96□□□□□ -1.78
EAR1YMR171C ERV15P38312 142 aa3.96□□□□□ -1.78
EAR1YMR171C YBR292CP38357 123 aa3.96□□□□□ -1.78
EAR1YMR171C BAT1P38891 393 aaKnown RBP3.96□□□□□ -1.78
EAR1YMR171C TIF34P40217 347 aaKnown RBP3.96□□□□□ -1.78
EAR1YMR171C YIL152WP40455 235 aa3.96□□□□□ -1.78
EAR1YMR171C RTS2P40962 232 aa3.96□□□□□ -1.78
EAR1YMR171C RHO5P53879 331 aaKnown RBP3.96□□□□□ -1.78
EAR1YMR171C TMA23Q03525 211 aa3.96□□□□□ -1.78
EAR1YMR171C YPR145C-AQ2V2P0 78 aa3.96□□□□□ -1.78
EAR1YMR171C SCEIP03882 235 aa3.95□□□□□ -1.78
EAR1YMR171C YFR010W-AP0C5N0 62 aa3.95□□□□□ -1.78
EAR1YMR171C YFL068WP0CX99 160 aa3.95□□□□□ -1.78
EAR1YMR171C YLL066W-AP0CY00 160 aa3.95□□□□□ -1.78
EAR1YMR171C YLL067W-AP0CY01 160 aa3.95□□□□□ -1.78
EAR1YMR171C RPS2P25443 254 aaKnown RBP3.95□□□□□ -1.78
EAR1YMR171C AFG1P32317 509 aa3.95□□□□□ -1.78
EAR1YMR171C ARO4P32449 370 aaKnown RBP3.95□□□□□ -1.78
EAR1YMR171C NRP1P32770 719 aaKnown RBP RIP-Chip data3.95□□□□□ -1.78not detected
EAR1YMR171C GNA1P43577 159 aaPredicted RBP3.95□□□□□ -1.78
EAR1YMR171C RNH201P53942 307 aa3.95□□□□□ -1.78
EAR1YMR171C RSM10Q03201 203 aa3.95□□□□□ -1.78
EAR1YMR171C MIM1Q08176 113 aa3.95□□□□□ -1.78
EAR1YMR171C YOR343CQ12484 108 aa3.95□□□□□ -1.78
EAR1YMR171C RPB3P16370 318 aaKnown RBP3.94□□□□□ -1.78
EAR1YMR171C SSS1P35179 80 aa3.94□□□□□ -1.78
EAR1YMR171C CMC1P36064 111 aa3.94□□□□□ -1.78
EAR1YMR171C SDH4P37298 181 aa3.94□□□□□ -1.78
EAR1YMR171C PFS1P38872 237 aa3.94□□□□□ -1.78
EAR1YMR171C YEA4P40004 342 aa3.94□□□□□ -1.78
EAR1YMR171C YJL016WP47072 561 aa3.94□□□□□ -1.78
EAR1YMR171C YJR011CP47086 261 aaPredicted RBP3.94□□□□□ -1.78
EAR1YMR171C DAN1P47178 298 aa3.94□□□□□ -1.78
EAR1YMR171C OCA1P50946 238 aaPredicted RBP3.94□□□□□ -1.78
Retrieved 100 of 5,963 RNA–protein pairs in 151.1 ms