RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	EMC5	P40540	141 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	YJL016W	P47072	561 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	PKP2	P53170	491 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	ALG9	P53868	555 aa	Known RBP	5.2	□□□□□ -1.58
RPN11	YFR004W	FMP41	P53889	259 aa	Known RBP	5.2	□□□□□ -1.58
RPN11	YFR004W	SMX3	P54999	86 aa	Predicted RBP	5.2	□□□□□ -1.58
RPN11	YFR004W	ACT1	P60010	375 aa	Known RBP	5.2	□□□□□ -1.58
RPN11	YFR004W	CAC2	Q04199	468 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	RTT103	Q05543	409 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	NCE102	Q12207	173 aa	RIP-Chip data	5.2	□□□□□ -1.58	not detected
RPN11	YFR004W	SPS100	P13130	326 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	SED4	P25365	1065 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	TRR1	P29509	319 aa	Known RBP	5.19	□□□□□ -1.58
RPN11	YFR004W	LDS1	P31379	325 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	YGP1	P38616	354 aa	Known RBP	5.19	□□□□□ -1.58
RPN11	YFR004W	YIL169C	P40442	995 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	REE1	P40893	198 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	AGX1	P43567	385 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	CTK2	P46962	323 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	PGU1	P47180	361 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	SKO1	Q02100	647 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	MIX14	Q04341	121 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	SCP1	Q08873	200 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	UBA3	Q99344	299 aa		5.19	□□□□□ -1.58
RPN11	YFR004W	COX5B	P00425	151 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	SCEI	P03882	235 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	YHR214C-D	P0CX93	97 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	NAM2	P11325	894 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	SPO7	P18410	259 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	MRS4	P23500	304 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	RFA3	P26755	122 aa	Known RBP	5.18	□□□□□ -1.58
RPN11	YFR004W	RFC2	P40348	353 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	YJR011C	P47086	261 aa	Predicted RBP	5.18	□□□□□ -1.58
RPN11	YFR004W	AVT4	P50944	713 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	UFD1	P53044	361 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	VPS28	Q02767	242 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	MRP51	Q02950	344 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	YPL039W	Q03080	316 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	SNO1	Q03144	224 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	THI74	Q04083	370 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	HNT3	Q08702	217 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	VAM3	Q12241	283 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	ISA2	Q12425	185 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	ISN1	Q99312	450 aa		5.18	□□□□□ -1.58
RPN11	YFR004W	MDH2	P22133	377 aa		5.17	□□□□□ -1.58
RPN11	YFR004W	RPI1	P23250	407 aa	Known RBP	5.17	□□□□□ -1.58
RPN11	YFR004W	IFM1	P25038	676 aa		5.17	□□□□□ -1.58
RPN11	YFR004W	MSK1	P32048	576 aa		5.17	□□□□□ -1.58
RPN11	YFR004W	ARC40	P38328	384 aa	Known RBP	5.17	□□□□□ -1.58
RPN11	YFR004W	YND1	P40009	630 aa		5.17	□□□□□ -1.58
RPN11	YFR004W	YIL024C	P40543	189 aa		5.17	□□□□□ -1.58
RPN11	YFR004W	SSN8	P47821	323 aa		5.17	□□□□□ -1.58
RPN11	YFR004W	YGR026W	P53217	278 aa		5.17	□□□□□ -1.58
RPN11	YFR004W	TEX1	P53851	422 aa	Known RBP	5.17	□□□□□ -1.58
RPN11	YFR004W	HRI1	Q05905	244 aa	Known RBP	5.17	□□□□□ -1.58
RPN11	YFR004W	NIP7	Q08962	181 aa	Known RBP	5.17	□□□□□ -1.58
RPN11	YFR004W	MED4	Q12343	284 aa		5.17	□□□□□ -1.58
RPN11	YFR004W	HUT1	Q12520	339 aa		5.17	□□□□□ -1.58
RPN11	YFR004W	QCR2	P07257	368 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	MIR1	P23641	311 aa	Known RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	REC114	P32841	428 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	SOF1	P33750	489 aa	Known RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	YKL162C	P36052	402 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	YKR073C	P36153	106 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	PRS3	P38689	320 aa	Known RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	LNP1	P38878	278 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	YEA6	P39953	335 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	GET2	P40056	285 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	QRI1	P43123	477 aa	Known RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	GNA1	P43577	159 aa	Predicted RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	YJR056C	P47115	236 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	ADO1	P47143	340 aa	Known RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	MSY1	P48527	492 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	NSA1	P53136	463 aa	Predicted RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	DUO1	P53168	247 aa	Known RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	RSM23	Q01163	450 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	SDC1	Q03323	175 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	DIG2	Q03373	323 aa	Known RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	TSA2	Q04120	196 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	ERP1	Q05359	219 aa	Known RBP	5.16	□□□□□ -1.58
RPN11	YFR004W	YCT1	Q12235	531 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	YLR122C	Q12312	125 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	POM34	Q12445	299 aa		5.16	□□□□□ -1.58
RPN11	YFR004W	TDH1	P00360	332 aa	Known RBP	5.15	□□□□□ -1.59
RPN11	YFR004W	CKA1	P15790	372 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	PDX1	P16451	410 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	GLC7	P32598	312 aa	Known RBP	5.15	□□□□□ -1.59
RPN11	YFR004W	MNS1	P32906	549 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	SEN34	P39707	275 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	NSE4	P43124	402 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	MOB2	P43563	287 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	MOG1	P47123	218 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	COX18	P53239	316 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	YNR048W	P53740	393 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	GPI15	P53961	229 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	YCL001W-A	P87012	153 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	DXO1	Q06349	442 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	SNU23	Q12368	194 aa	Predicted RBP	5.15	□□□□□ -1.59
RPN11	YFR004W	Q0297	Q9ZZV8	51 aa		5.15	□□□□□ -1.59
RPN11	YFR004W	CBP6	P07253	162 aa	Predicted RBP	5.14	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 132.4 ms