RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C SEY1Q99287 776 aa1.69□□□□□ -2.14
RUB1YDR139C APS1P35181 156 aa1.68□□□□□ -2.14
RUB1YDR139C YET1P35723 206 aa1.68□□□□□ -2.14
RUB1YDR139C SKG1P36169 355 aa1.68□□□□□ -2.14
RUB1YDR139C RTR1P40084 226 aaPredicted RBP1.68□□□□□ -2.14
RUB1YDR139C YRB2P40517 327 aa1.68□□□□□ -2.14
RUB1YDR139C OTU1P43558 301 aa1.68□□□□□ -2.14
RUB1YDR139C NUP57P48837 541 aa1.68□□□□□ -2.14
RUB1YDR139C DOC1P53068 250 aa1.68□□□□□ -2.14
RUB1YDR139C SWP1Q02795 286 aa1.68□□□□□ -2.14
RUB1YDR139C TSC3Q3E790 80 aa1.68□□□□□ -2.14
RUB1YDR139C TDA8Q6B2U8 126 aa1.68□□□□□ -2.14
RUB1YDR139C DBF2P22204 572 aa1.67□□□□□ -2.14
RUB1YDR139C UMP1P38293 148 aa1.67□□□□□ -2.14
RUB1YDR139C GLE2P40066 365 aa1.67□□□□□ -2.14
RUB1YDR139C RPL13BP40212 199 aaKnown RBP1.67□□□□□ -2.14
RUB1YDR139C YRB1P41920 201 aaKnown RBP1.67□□□□□ -2.14
RUB1YDR139C GAS3Q03655 524 aa1.67□□□□□ -2.14
RUB1YDR139C RPL13AQ12690 199 aaPredicted RBP1.67□□□□□ -2.14
RUB1YDR139C YBR121C-AP0C5L4 52 aa1.66□□□□□ -2.14
RUB1YDR139C NHP6BP11633 99 aaKnown RBP1.66□□□□□ -2.14
RUB1YDR139C FPR1P20081 114 aaKnown RBP1.66□□□□□ -2.14
RUB1YDR139C SNC2P33328 115 aa1.66□□□□□ -2.14
RUB1YDR139C MRPL17P36528 281 aa1.66□□□□□ -2.14
RUB1YDR139C TCD1P38756 429 aa1.66□□□□□ -2.14
RUB1YDR139C RTC3P38804 111 aaPredicted RBP1.66□□□□□ -2.14
RUB1YDR139C YKL183C-AQ3E765 70 aa1.66□□□□□ -2.14
RUB1YDR139C MET5P47169 1442 aa1.66□□□□□ -2.14
RUB1YDR139C RPL2AP0CX45 254 aaKnown RBP1.65□□□□□ -2.15
RUB1YDR139C RPL2BP0CX46 254 aaKnown RBP1.65□□□□□ -2.15
RUB1YDR139C PBN1P25580 416 aa1.65□□□□□ -2.15
RUB1YDR139C TCA17P32613 152 aa1.65□□□□□ -2.15
RUB1YDR139C YNR077CP53758 84 aa1.65□□□□□ -2.15
RUB1YDR139C JLP1Q12358 412 aa1.65□□□□□ -2.15
RUB1YDR139C TIM9O74700 87 aa1.64□□□□□ -2.15
RUB1YDR139C SEC17P32602 292 aa1.64□□□□□ -2.15
RUB1YDR139C UPS2P35200 230 aa1.64□□□□□ -2.15
RUB1YDR139C TMA19P35691 167 aaKnown RBP1.64□□□□□ -2.15
RUB1YDR139C GAA1P39012 614 aa1.64□□□□□ -2.15
RUB1YDR139C ERG28P40030 148 aa1.64□□□□□ -2.15
RUB1YDR139C NUP49Q02199 472 aa1.64□□□□□ -2.15
RUB1YDR139C MCP1Q12106 302 aa1.64□□□□□ -2.15
RUB1YDR139C NCB2Q92317 146 aa1.64□□□□□ -2.15
RUB1YDR139C PDR18P53756 1333 aa1.64□□□□□ -2.15
RUB1YDR139C UBR2Q07963 1872 aa1.63□□□□□ -2.15
RUB1YDR139C SIP3P38717 1229 aa1.63□□□□□ -2.15
RUB1YDR139C RMD6P39975 231 aa1.63□□□□□ -2.15
RUB1YDR139C ADO1P47143 340 aaKnown RBP1.63□□□□□ -2.15
RUB1YDR139C MGA1P53050 456 aa1.63□□□□□ -2.15
RUB1YDR139C SAY1P53324 424 aa1.63□□□□□ -2.15
RUB1YDR139C ANT1Q06497 328 aa1.63□□□□□ -2.15
RUB1YDR139C TUS1Q06412 1307 aa1.63□□□□□ -2.15
RUB1YDR139C GPA2P10823 449 aa1.62□□□□□ -2.15
RUB1YDR139C STE18P18852 110 aa1.62□□□□□ -2.15
RUB1YDR139C PRX1P34227 261 aaKnown RBP1.62□□□□□ -2.15
RUB1YDR139C UTP30P36144 274 aaKnown RBP1.62□□□□□ -2.15
RUB1YDR139C GVP36P40531 326 aaKnown RBP1.62□□□□□ -2.15
RUB1YDR139C GPM2Q12008 311 aa1.62□□□□□ -2.15
RUB1YDR139C RUD3Q12234 484 aaKnown RBP1.62□□□□□ -2.15
RUB1YDR139C GCN3P14741 305 aa1.61□□□□□ -2.15
RUB1YDR139C COQ1P18900 473 aa1.61□□□□□ -2.15
RUB1YDR139C IDH1P28834 360 aaKnown RBP RIP-Chip data1.61□□□□□ -2.15not detected
RUB1YDR139C TFC1P32367 649 aa1.61□□□□□ -2.15
RUB1YDR139C MGM101P32787 269 aaKnown RBP1.61□□□□□ -2.15
RUB1YDR139C CBT1P36038 271 aaPredicted RBP1.61□□□□□ -2.15
RUB1YDR139C AST2P39945 430 aaKnown RBP1.61□□□□□ -2.15
RUB1YDR139C YNL194CP40169 301 aa1.61□□□□□ -2.15
RUB1YDR139C MSS2P40990 351 aa1.61□□□□□ -2.15
RUB1YDR139C GCN20P43535 752 aaKnown RBP1.61□□□□□ -2.15
RUB1YDR139C IRC18P47056 224 aa1.61□□□□□ -2.15
RUB1YDR139C EAF6P47128 113 aa1.61□□□□□ -2.15
RUB1YDR139C FSF1Q12029 327 aaKnown RBP1.61□□□□□ -2.15
RUB1YDR139C YPL162CQ12042 273 aa1.61□□□□□ -2.15
RUB1YDR139C RIO1Q12196 484 aaKnown RBP1.61□□□□□ -2.15
RUB1YDR139C SEC4P07560 215 aaKnown RBP1.6□□□□□ -2.15
RUB1YDR139C URA5P13298 226 aaKnown RBP1.6□□□□□ -2.15
RUB1YDR139C KSS1P14681 368 aa1.6□□□□□ -2.15
RUB1YDR139C PRP18P33411 251 aaPredicted RBP1.6□□□□□ -2.15
RUB1YDR139C YBR209WP38311 105 aa1.6□□□□□ -2.15
RUB1YDR139C ERJ5P43613 295 aaPredicted RBP1.6□□□□□ -2.15
RUB1YDR139C RAD17P48581 401 aa1.6□□□□□ -2.15
RUB1YDR139C YGR050CP53231 118 aa1.6□□□□□ -2.15
RUB1YDR139C PDR17P53844 350 aa1.6□□□□□ -2.15
RUB1YDR139C ATG40Q99325 256 aa1.6□□□□□ -2.15
RUB1YDR139C YIL177CP40434 1758 aa1.59□□□□□ -2.15
RUB1YDR139C YJL225CP40889 1758 aa1.59□□□□□ -2.15
RUB1YDR139C QCR8P08525 94 aa1.59□□□□□ -2.15
RUB1YDR139C BET1P22804 142 aa1.59□□□□□ -2.15
RUB1YDR139C PTM1P32857 523 aa1.59□□□□□ -2.15
RUB1YDR139C YDR249CQ03787 373 aa1.59□□□□□ -2.15
RUB1YDR139C YDR157WA0A023PZE8 133 aa1.58□□□□□ -2.16
RUB1YDR139C CDC33P07260 213 aaKnown RBP1.58□□□□□ -2.16
RUB1YDR139C SHE2P36068 246 aaKnown RBP RIP-Chip data1.58□□□□□ -2.16not detected
RUB1YDR139C YBR285WP38354 144 aa1.58□□□□□ -2.16
RUB1YDR139C CWC23P52868 283 aaPredicted RBP1.58□□□□□ -2.16
RUB1YDR139C POP3P53833 195 aaPredicted RBP1.58□□□□□ -2.16
RUB1YDR139C YHR214C-EQ8TGK0 99 aa1.58□□□□□ -2.16
RUB1YDR139C KNH1P50112 268 aa1.57□□□□□ -2.16
RUB1YDR139C CUS2P53830 285 aaPredicted RBP1.57□□□□□ -2.16
RUB1YDR139C RPL25P04456 142 aaKnown RBP1.56□□□□□ -2.16
Retrieved 100 of 5,963 RNA–protein pairs in 7.7 ms