RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C YMR315WQ04869 349 aaKnown RBP3.18□□□□□ -1.9
NPL4YBR170C SOD1P00445 154 aaKnown RBP3.17□□□□□ -1.9
NPL4YBR170C TRX3P25372 127 aa3.17□□□□□ -1.9
NPL4YBR170C MAK5P38112 773 aaPredicted RBP3.17□□□□□ -1.9
NPL4YBR170C HMF1P40037 129 aaKnown RBP3.17□□□□□ -1.9
NPL4YBR170C YNL247WP53852 767 aaKnown RBP3.17□□□□□ -1.9
NPL4YBR170C YNL010WP53981 241 aaKnown RBP3.17□□□□□ -1.9
NPL4YBR170C ECM11Q04110 302 aa3.17□□□□□ -1.9
NPL4YBR170C QCR2P07257 368 aa3.16□□□□□ -1.9
NPL4YBR170C YPR170W-BP0C5R9 85 aa3.16□□□□□ -1.9
NPL4YBR170C MAG1P22134 296 aaKnown RBP3.16□□□□□ -1.9
NPL4YBR170C CLG1P35190 452 aa3.16□□□□□ -1.9
NPL4YBR170C YAR068WP39564 161 aa3.16□□□□□ -1.9
NPL4YBR170C OST2P46964 130 aa3.16□□□□□ -1.9
NPL4YBR170C GAS3Q03655 524 aa3.16□□□□□ -1.9
NPL4YBR170C SIR2P06700 562 aa3.16□□□□□ -1.9
NPL4YBR170C MGT1P26188 188 aa3.16□□□□□ -1.9
NPL4YBR170C MID2P36027 376 aa3.16□□□□□ -1.9
NPL4YBR170C MTW1P39731 289 aa3.16□□□□□ -1.9
NPL4YBR170C YER076CP40049 302 aa3.16□□□□□ -1.9
NPL4YBR170C GON7P46984 123 aa3.16□□□□□ -1.9
NPL4YBR170C ATG39Q06159 398 aa3.16□□□□□ -1.9
NPL4YBR170C YDL085C-AQ3E7B7 68 aaKnown RBP3.16□□□□□ -1.9
NPL4YBR170C YOR268CQ08734 132 aa3.15□□□□□ -1.91
NPL4YBR170C YOR283WQ12040 230 aaKnown RBP3.15□□□□□ -1.91
NPL4YBR170C CNB1P25296 175 aa3.14□□□□□ -1.91
NPL4YBR170C SEC17P32602 292 aa3.14□□□□□ -1.91
NPL4YBR170C UTP30P36144 274 aaKnown RBP3.14□□□□□ -1.91
NPL4YBR170C POP4P38336 279 aa3.14□□□□□ -1.91
NPL4YBR170C YHR125WP38831 101 aa3.14□□□□□ -1.91
NPL4YBR170C RSM25P40496 264 aa3.14□□□□□ -1.91
NPL4YBR170C ARC15P40518 154 aaRIP-Chip data3.14□□□□□ -1.91not detected
NPL4YBR170C BRX1Q08235 291 aaKnown RBP3.14□□□□□ -1.91
NPL4YBR170C YPL162CQ12042 273 aa3.14□□□□□ -1.91
NPL4YBR170C Q0255P03881 472 aa3.13□□□□□ -1.91
NPL4YBR170C ADH3P07246 375 aaKnown RBP3.13□□□□□ -1.91
NPL4YBR170C ATG22P25568 528 aa3.13□□□□□ -1.91
NPL4YBR170C YCR090CP25654 182 aaKnown RBP3.13□□□□□ -1.91
NPL4YBR170C ARO7P32178 256 aa3.13□□□□□ -1.91
NPL4YBR170C AST2P39945 430 aaKnown RBP3.13□□□□□ -1.91
NPL4YBR170C TMA22P47089 198 aaPredicted RBP3.13□□□□□ -1.91
NPL4YBR170C YLR050CQ12155 161 aaKnown RBP3.13□□□□□ -1.91
NPL4YBR170C YFR032C-BQ8TGU2 87 aa3.13□□□□□ -1.91
NPL4YBR170C MBF1O14467 151 aaKnown RBP3.13□□□□□ -1.91
NPL4YBR170C PSF1Q12488 208 aa3.13□□□□□ -1.91
NPL4YBR170C RPL9AP05738 191 aaKnown RBP3.12□□□□□ -1.91
NPL4YBR170C RPS23AP0CX29 145 aaKnown RBP3.12□□□□□ -1.91
NPL4YBR170C RPS23BP0CX30 145 aa3.12□□□□□ -1.91
NPL4YBR170C SNF4P12904 322 aa3.12□□□□□ -1.91
NPL4YBR170C FIG1P38224 298 aa3.12□□□□□ -1.91
NPL4YBR170C GLE2P40066 365 aa3.12□□□□□ -1.91
NPL4YBR170C YIL059CP40520 121 aa3.12□□□□□ -1.91
NPL4YBR170C YIR035CP40579 254 aa3.12□□□□□ -1.91
NPL4YBR170C RPL9BP51401 191 aaKnown RBP3.12□□□□□ -1.91
NPL4YBR170C APJ1P53940 528 aa3.12□□□□□ -1.91
NPL4YBR170C YDR249CQ03787 373 aa3.12□□□□□ -1.91
NPL4YBR170C REP2P03872 296 aa3.11□□□□□ -1.91
NPL4YBR170C YLR156WP0CE96 114 aa3.11□□□□□ -1.91
NPL4YBR170C YLR159WP0CE97 114 aa3.11□□□□□ -1.91
NPL4YBR170C YLR161WP0CE98 114 aa3.11□□□□□ -1.91
NPL4YBR170C CTR2P38865 189 aa3.11□□□□□ -1.91
NPL4YBR170C NVJ1P38881 321 aa3.11□□□□□ -1.91
NPL4YBR170C LSM4P40070 187 aaKnown RBP3.11□□□□□ -1.91
NPL4YBR170C YER188WP40103 239 aa3.11□□□□□ -1.91
NPL4YBR170C FMP32P43557 207 aa3.11□□□□□ -1.91
NPL4YBR170C PIR5P46999 287 aa3.11□□□□□ -1.91
NPL4YBR170C NUP49Q02199 472 aa3.11□□□□□ -1.91
NPL4YBR170C RIO1Q12196 484 aaKnown RBP3.11□□□□□ -1.91
NPL4YBR170C SMD3P43321 101 aaKnown RBP3.1□□□□□ -1.91
NPL4YBR170C BUD13P46947 266 aaPredicted RBP3.1□□□□□ -1.91
NPL4YBR170C ARP3P47117 449 aaKnown RBP3.1□□□□□ -1.91
NPL4YBR170C TRM12Q04235 462 aa3.1□□□□□ -1.91
NPL4YBR170C PEX12Q04370 399 aa3.1□□□□□ -1.91
NPL4YBR170C MCP1Q12106 302 aa3.1□□□□□ -1.91
NPL4YBR170C SAS5Q99314 248 aa3.1□□□□□ -1.91
NPL4YBR170C RPS24AP0CX31 135 aaKnown RBP3.1□□□□□ -1.91
NPL4YBR170C RPS24BP0CX32 135 aaKnown RBP3.1□□□□□ -1.91
NPL4YBR170C AHC2P25649 128 aa3.1□□□□□ -1.91
NPL4YBR170C MEI4P29467 408 aa3.1□□□□□ -1.91
NPL4YBR170C SKG1P36169 355 aa3.1□□□□□ -1.91
NPL4YBR170C ICE2P40499 491 aa3.1□□□□□ -1.91
NPL4YBR170C FKS1P38631 1876 aaKnown RBP3.1□□□□□ -1.91
NPL4YBR170C YIL177CP40434 1758 aa3.1□□□□□ -1.91
NPL4YBR170C YJL225CP40889 1758 aa3.1□□□□□ -1.91
NPL4YBR170C YHR032W-AP0C5N6 59 aa3.09□□□□□ -1.91
NPL4YBR170C DPM1P14020 267 aaKnown RBP3.09□□□□□ -1.91
NPL4YBR170C RPB3P16370 318 aaKnown RBP3.09□□□□□ -1.91
NPL4YBR170C PET9P18239 318 aaKnown RBP3.09□□□□□ -1.91
NPL4YBR170C YER084WP40057 128 aa3.09□□□□□ -1.91
NPL4YBR170C TIF34P40217 347 aaKnown RBP3.09□□□□□ -1.91
NPL4YBR170C YGL235WP53071 178 aa3.09□□□□□ -1.91
NPL4YBR170C ARO8P53090 500 aaKnown RBP3.09□□□□□ -1.91
NPL4YBR170C CAB4P53332 305 aa3.09□□□□□ -1.91
NPL4YBR170C CDC8P00572 216 aa3.08□□□□□ -1.92
NPL4YBR170C BET1P22804 142 aa3.08□□□□□ -1.92
NPL4YBR170C FMP23P38231 175 aa3.08□□□□□ -1.92
NPL4YBR170C AIM34Q03673 198 aa3.08□□□□□ -1.92
NPL4YBR170C PEX11Q12462 236 aa3.08□□□□□ -1.92
NPL4YBR170C URA5P13298 226 aaKnown RBP3.07□□□□□ -1.92
NPL4YBR170C AGA2P32781 87 aa3.07□□□□□ -1.92
Retrieved 100 of 5,963 RNA–protein pairs in 25.9 ms