RNA–Protein interactions for RNA: YMR128W

ECM16, Transcript of Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP, yeastyeast

Gene ECM16, Length 3,804 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ECM16YMR128W SPT10P35208 640 aa3.35□□□□□ -1.87
ECM16YMR128W SMB1P40018 196 aaKnown RBP3.35□□□□□ -1.87
ECM16YMR128W OGG1P53397 376 aaPredicted RBP3.35□□□□□ -1.87
ECM16YMR128W MRX8Q05473 314 aa3.35□□□□□ -1.87
ECM16YMR128W PAL1Q05518 499 aaKnown RBP3.35□□□□□ -1.87
ECM16YMR128W RTT103Q05543 409 aa3.35□□□□□ -1.87
ECM16YMR128W SEC16P48415 2195 aaKnown RBP3.35□□□□□ -1.87
ECM16YMR128W RFA1P22336 621 aaKnown RBP3.35□□□□□ -1.87
ECM16YMR128W CPR4P25334 318 aa3.35□□□□□ -1.87
ECM16YMR128W TRR1P29509 319 aaKnown RBP3.35□□□□□ -1.87
ECM16YMR128W FAA1P30624 700 aaKnown RBP3.35□□□□□ -1.87
ECM16YMR128W NOP16P40007 231 aaKnown RBP3.35□□□□□ -1.87
ECM16YMR128W YDR248CQ03786 193 aa3.35□□□□□ -1.87
ECM16YMR128W YML053CQ04978 212 aa3.35□□□□□ -1.87
ECM16YMR128W SRL2Q12020 392 aa3.35□□□□□ -1.87
ECM16YMR128W FCF2Q12035 217 aaPredicted RBP3.35□□□□□ -1.87
ECM16YMR128W DCN1Q12395 269 aa3.35□□□□□ -1.87
ECM16YMR128W ERG27Q12452 347 aaKnown RBP3.35□□□□□ -1.87
ECM16YMR128W YLL053CP0CD98 152 aa3.34□□□□□ -1.87
ECM16YMR128W SLC1P33333 303 aa3.34□□□□□ -1.87
ECM16YMR128W RIB5P38145 238 aa3.34□□□□□ -1.87
ECM16YMR128W SSH1P38353 490 aaKnown RBP3.34□□□□□ -1.87
ECM16YMR128W YEA6P39953 335 aa3.34□□□□□ -1.87
ECM16YMR128W ATF1P40353 525 aa3.34□□□□□ -1.87
ECM16YMR128W CCC1P47818 322 aa3.34□□□□□ -1.87
ECM16YMR128W APM1Q00776 475 aaPredicted RBP3.34□□□□□ -1.87
ECM16YMR128W ERP1Q05359 219 aaKnown RBP3.34□□□□□ -1.87
ECM16YMR128W ADH3P07246 375 aaKnown RBP3.34□□□□□ -1.87
ECM16YMR128W MATALPHA1P0CY06 175 aa3.34□□□□□ -1.87
ECM16YMR128W HMLALPHA1P0CY07 175 aa3.34□□□□□ -1.87
ECM16YMR128W TRS65P32893 560 aa3.34□□□□□ -1.87
ECM16YMR128W YPC1P38298 316 aa3.34□□□□□ -1.87
ECM16YMR128W FLX1P40464 311 aa3.34□□□□□ -1.87
ECM16YMR128W YAP6Q03935 383 aa3.34□□□□□ -1.87
ECM16YMR128W GMC1Q04399 608 aa3.34□□□□□ -1.87
ECM16YMR128W BNA5Q05979 453 aa3.34□□□□□ -1.87
ECM16YMR128W MCT1Q12283 360 aa3.34□□□□□ -1.87
ECM16YMR128W COA2Q3E823 68 aa3.34□□□□□ -1.87
ECM16YMR128W SEC62P21825 274 aa3.34□□□□□ -1.88
ECM16YMR128W SEF1P34228 1148 aa3.34□□□□□ -1.88
ECM16YMR128W YKL071WP36086 256 aa3.34□□□□□ -1.88
ECM16YMR128W UMP1P38293 148 aa3.34□□□□□ -1.88
ECM16YMR128W YJR141WP47172 347 aaPredicted RBP3.34□□□□□ -1.88
ECM16YMR128W FIT1Q04433 528 aa3.34□□□□□ -1.88
ECM16YMR128W YIL134C-AQ45U18 67 aa3.34□□□□□ -1.88
ECM16YMR128W CET1O13297 549 aaPredicted RBP3.33□□□□□ -1.88
ECM16YMR128W GDH1P07262 454 aaKnown RBP3.33□□□□□ -1.88
ECM16YMR128W CTA1P15202 515 aa3.33□□□□□ -1.88
ECM16YMR128W MEK1P24719 497 aaPredicted RBP3.33□□□□□ -1.88
ECM16YMR128W ATG15P25641 520 aa3.33□□□□□ -1.88
ECM16YMR128W SRP102P36057 244 aaPredicted RBP3.33□□□□□ -1.88
ECM16YMR128W YMR262WP38430 313 aa3.33□□□□□ -1.88
ECM16YMR128W MNL1P38888 796 aa3.33□□□□□ -1.88
ECM16YMR128W LYS1P38998 373 aaRIP-Chip data3.33□□□□□ -1.88not detected
ECM16YMR128W IKS1P47042 667 aa3.33□□□□□ -1.88
ECM16YMR128W VPS28Q02767 242 aa3.33□□□□□ -1.88
ECM16YMR128W YPD1Q07688 167 aa3.33□□□□□ -1.88
ECM16YMR128W YCR025CP25352 136 aa3.33□□□□□ -1.88
ECM16YMR128W SLX9P53251 210 aaPredicted RBP3.33□□□□□ -1.88
ECM16YMR128W SCW4P53334 386 aaKnown RBP3.33□□□□□ -1.88
ECM16YMR128W MPP6P53725 186 aaPredicted RBP3.33□□□□□ -1.88
ECM16YMR128W CYT2Q00873 224 aa3.33□□□□□ -1.88
ECM16YMR128W TMA23Q03525 211 aa3.33□□□□□ -1.88
ECM16YMR128W MRX9Q07349 420 aaKnown RBP3.33□□□□□ -1.88
ECM16YMR128W CMC2Q3E7A4 109 aa3.33□□□□□ -1.88
ECM16YMR128W ACC1Q00955 2233 aaKnown RBP3.33□□□□□ -1.88
ECM16YMR128W GAL7P08431 366 aa3.33□□□□□ -1.88
ECM16YMR128W ERG3P32353 365 aa3.33□□□□□ -1.88
ECM16YMR128W YOR062CP36025 268 aa3.33□□□□□ -1.88
ECM16YMR128W VBA2P38358 474 aaKnown RBP3.33□□□□□ -1.88
ECM16YMR128W FMO1P38866 432 aa3.33□□□□□ -1.88
ECM16YMR128W LSM4P40070 187 aaKnown RBP3.33□□□□□ -1.88
ECM16YMR128W YNL092WP53934 400 aa3.33□□□□□ -1.88
ECM16YMR128W YLR152CP54072 576 aa3.33□□□□□ -1.88
ECM16YMR128W SMX3P54999 86 aaPredicted RBP3.33□□□□□ -1.88
ECM16YMR128W CAB5Q03941 241 aa3.33□□□□□ -1.88
ECM16YMR128W CTR3Q06686 241 aa3.33□□□□□ -1.88
ECM16YMR128W POP5P28005 173 aa3.32□□□□□ -1.88
ECM16YMR128W LAC1P28496 418 aa3.32□□□□□ -1.88
ECM16YMR128W RML2P32611 393 aa3.32□□□□□ -1.88
ECM16YMR128W PAU15P40585 124 aa3.32□□□□□ -1.88
ECM16YMR128W SEH1P53011 349 aaKnown RBP3.32□□□□□ -1.88
ECM16YMR128W SRO7Q12038 1033 aa3.32□□□□□ -1.88
ECM16YMR128W BLM10P43583 2143 aa3.32□□□□□ -1.88
ECM16YMR128W YLR415CO13578 112 aa3.32□□□□□ -1.88
ECM16YMR128W CDC39P25655 2108 aaKnown RBP3.32□□□□□ -1.88
ECM16YMR128W SSH4P32343 579 aa3.32□□□□□ -1.88
ECM16YMR128W POP7P38291 140 aa3.32□□□□□ -1.88
ECM16YMR128W HXT14P42833 540 aa3.32□□□□□ -1.88
ECM16YMR128W UFD1P53044 361 aa3.32□□□□□ -1.88
ECM16YMR128W MTM1P53320 366 aa3.32□□□□□ -1.88
ECM16YMR128W RNH201P53942 307 aa3.32□□□□□ -1.88
ECM16YMR128W SAM50P53969 484 aa3.32□□□□□ -1.88
ECM16YMR128W STD1Q02794 444 aa3.32□□□□□ -1.88
ECM16YMR128W NCE101Q02820 53 aa3.32□□□□□ -1.88
ECM16YMR128W EKI1Q03764 534 aa3.32□□□□□ -1.88
ECM16YMR128W HNT1Q04344 158 aaKnown RBP3.32□□□□□ -1.88
ECM16YMR128W AVO2Q04749 426 aa3.32□□□□□ -1.88
ECM16YMR128W MED7Q08278 222 aa3.32□□□□□ -1.88
ECM16YMR128W HMS1Q12398 434 aa3.32□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 91 ms