RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CTC1Q2NKJ3 1217 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 HSP90AA5PQ58FG0 334 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 ACSBG2Q5FVE4 666 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 TTBK2Q6IQ55 1244 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 RFWD3Q6PCD5 774 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 KLHDC10Q6PID8 442 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 IZUMO2Q6UXV1 221 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 TUBA1AQ71U36 451 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 ARHGAP24Q8N264 748 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 GIPC3Q8TF64 312 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 MTMR8Q96EF0 704 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 ANKRD36BP1Q96IX9 119 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 ECSITQ9BQ95 431 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 TANGO6Q9C0B7 1094 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.84□□□□□ -0.67
VPS39-214ENST00000614932 PPP1R9AQ9ULJ8 1098 aa10.84□□□□□ -0.67
VPS39-214ENST00000614932 TMA7Q9Y2S6 64 aaKnown RBP10.84□□□□□ -0.67
VPS39-214ENST00000614932 SNED1Q8TER0 1413 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 UNCXA6NJT0 531 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 BUB1O43683 1085 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 FBXO21O94952 628 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 MAGEA1P43355 309 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 KIF11P52732 1056 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 TUBA4AP68366 448 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 E2F2Q14209 437 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 GRM2Q14416 872 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 LPIN1Q14693 890 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 LRRC14Q15048 493 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 CYTH1Q15438 398 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 ZNF423Q2M1K9 1284 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 SNRNP48Q6IEG0 339 aaKnown RBP10.83□□□□□ -0.68
VPS39-214ENST00000614932 KCTD1Q719H9 257 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 ZSCAN29Q8IWY8 852 aaPredicted RBP10.83□□□□□ -0.68
VPS39-214ENST00000614932 DTX3LQ8TDB6 740 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 ARHGEF2Q92974 986 aaKnown RBP10.83□□□□□ -0.68
VPS39-214ENST00000614932 LRRC37BQ96QE4 947 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 TXLNGYQ9BZA5 131 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 BARHL2Q9NY43 387 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 HOXC10Q9NYD6 342 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 TELO2Q9Y4R8 837 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 PCDHB2Q9Y5E7 798 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 FAM47E-STBD1D6RA91 191 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 PLEKP08567 350 aaPredicted RBP10.83□□□□□ -0.68
VPS39-214ENST00000614932 MSL3P1P0C860 447 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 T-ENOLP0DO92 83 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 CALML3P27482 149 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 SNAP25P60880 206 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 KCNMA1Q12791 1236 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 CGB2Q6NT52 195 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 DTHD1Q6ZMT9 781 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 SH3RF1Q7Z6J0 888 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 SP8Q8IXZ3 490 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 CKAP2Q8WWK9 683 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 COX4I2Q96KJ9 171 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 SPATA17Q96L03 361 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 CRAMP1Q96RY5 1269 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 CCDC113Q9H0I3 377 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 ZNHIT2Q9UHR6 403 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 ANGPTL2Q9UKU9 493 aa10.83□□□□□ -0.68
VPS39-214ENST00000614932 TRIM49BA6NDI0 452 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 CCDC160A6NGH7 325 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 TBKBP1A7MCY6 615 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 H7C1D1 291 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 TECP42680 631 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 YARSP54577 528 aaKnown RBP10.82□□□□□ -0.68
VPS39-214ENST00000614932 KCTD21Q4G0X4 260 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 GJC2Q5T442 439 aaPredicted RBP10.82□□□□□ -0.68
VPS39-214ENST00000614932 DENND2CQ68D51 928 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 ZNF449Q6P9G9 518 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 DSTYKQ6XUX3 929 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 SFR1Q86XK3 245 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 ANKRD13CQ8N6S4 541 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 C4orf32Q8N8J7 132 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 DDHD1Q8NEL9 900 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 NEDD1Q8NHV4 660 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 MGARPQ8TDB4 240 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 LRRC15Q8TF66 581 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 SCFD2Q8WU76 684 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 CEP44Q9C0F1 390 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 ZMYND12Q9H0C1 365 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 CUEDC2Q9H467 287 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 FUOMA2VDF0 154 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 DDX3XO00571 662 aaKnown RBP eCLIP10.82□□□□□ -0.68
VPS39-214ENST00000614932 NDC80O14777 642 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 MAPK13O15264 365 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 TEX28O15482 410 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 ZNF862O60290 1169 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 DKC1O60832 514 aaKnown RBP eCLIP10.82□□□□□ -0.68
VPS39-214ENST00000614932 TBCAO75347 108 aaKnown RBP10.82□□□□□ -0.68
VPS39-214ENST00000614932 APOEP02649 317 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 TAL1P17542 331 aaPredicted RBP10.82□□□□□ -0.68
VPS39-214ENST00000614932 MTFR1Q15390 333 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 UBE2SQ16763 222 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 IL23RQ5VWK5 629 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 SIX5Q8N196 739 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 RIN3Q8TB24 985 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 PRICKLE1Q96MT3 831 aaPredicted RBP10.82□□□□□ -0.68
VPS39-214ENST00000614932 FNBP1Q96RU3 617 aa10.82□□□□□ -0.68
VPS39-214ENST00000614932 PABPC3Q9H361 631 aaKnown RBP10.82□□□□□ -0.68
VPS39-214ENST00000614932 PLGRKTQ9HBL7 147 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms