RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 HARSP12081 509 aaKnown RBP12.63□□□□□ -0.39
RTN3-209ENST00000538995 LIG4P49917 911 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 CLCNKBP51801 687 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 OSTNP61366 133 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 GTF2BQ00403 316 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 STK38Q15208 465 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 FAM171A1Q5VUB5 890 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 TMC5Q6UXY8 1006 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 C12orf76Q8N812 135 aaPredicted RBP12.63□□□□□ -0.39
RTN3-209ENST00000538995 HASPINQ8TF76 798 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 RABGGTAQ92696 567 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 HVCN1Q96D96 273 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 ZBTB45Q96K62 511 aaPredicted RBP12.63□□□□□ -0.39
RTN3-209ENST00000538995 B3GALT6Q96L58 329 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 TSPAN18Q96SJ8 248 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 FIZ1Q96SL8 496 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 ZDHHC7Q9NXF8 308 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 PODXLO00592 558 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 SPTLC2O15270 562 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 TGM5O43548 720 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 GAP43P17677 238 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 COL9A1P20849 921 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 FGFR3P22607 806 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 RPL9P32969 192 aaKnown RBP12.62□□□□□ -0.39
RTN3-209ENST00000538995 SOX4Q06945 474 aaPredicted RBP12.62□□□□□ -0.39
RTN3-209ENST00000538995 PSMD5Q16401 504 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 LILRA6Q6PI73 481 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 CCDC149Q6ZUS6 474 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 SV2BQ7L1I2 683 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 TDRD5Q8NAT2 981 aaKnown RBP12.62□□□□□ -0.39
RTN3-209ENST00000538995 LNX1Q8TBB1 728 aaPredicted RBP12.62□□□□□ -0.39
RTN3-209ENST00000538995 DDX12PQ92771 950 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 EDAQ92838 391 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 ZMAT2Q96NC0 199 aaKnown RBP12.62□□□□□ -0.39
RTN3-209ENST00000538995 ZHX3Q9H4I2 956 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 CDH22Q9UJ99 828 aa12.62□□□□□ -0.39
RTN3-209ENST00000538995 A0A0B4J269 797 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 TTC26A0AVF1 554 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 FAM86C2PA6NEL3 165 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 C2CD4DB7Z1M9 353 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 OGTO15294 1046 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 MEFVO15553 781 aaPredicted RBP12.61□□□□□ -0.39
RTN3-209ENST00000538995 FAM189A1O60320 539 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 ZSCAN22P10073 491 aaPredicted RBP12.61□□□□□ -0.39
RTN3-209ENST00000538995 STAT6P42226 847 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 MATR3P43243 847 aaKnown RBP eCLIP12.61□□□□□ -0.391e-6■■□□□ 13.3
RTN3-209ENST00000538995 PTPN21Q16825 1174 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 SLC10A6Q3KNW5 377 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 ATL3Q6DD88 541 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 PRSS55Q6UWB4 352 aaPredicted RBP12.61□□□□□ -0.39
RTN3-209ENST00000538995 CD300LGQ6UXG3 332 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 ANKS3Q6ZW76 656 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 CEP57Q86XR8 500 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 ZDHHC14Q8IZN3 488 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 PLCD3Q8N3E9 789 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 CLSTN3Q9BQT9 956 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 HAPLN2Q9GZV7 340 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 CUEDC2Q9H467 287 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 GOLGA2P5Q9HBQ8 144 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 TSHZ2Q9NRE2 1034 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 OLFML3Q9NRN5 406 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 MTRRQ9UBK8 725 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 FBXW11Q9UKB1 542 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 ARIH1Q9Y4X5 557 aaPredicted RBP12.61□□□□□ -0.39
RTN3-209ENST00000538995 BACE2Q9Y5Z0 518 aa12.61□□□□□ -0.39
RTN3-209ENST00000538995 FRMD3A2A2Y4 597 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 MYMKA6NI61 221 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 SYN3O14994 580 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 XPOTO43592 962 aaKnown RBP12.6□□□□□ -0.39
RTN3-209ENST00000538995 PPP1R37O75864 691 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 F13A1P00488 732 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 ADRB2P07550 413 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 POU2F2P09086 479 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 WEE2P0C1S8 567 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 CXCL8P10145 99 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 RPL17P18621 184 aaKnown RBP12.6□□□□□ -0.39
RTN3-209ENST00000538995 CYP3A5P20815 502 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 NMT1P30419 496 aaKnown RBP12.6□□□□□ -0.39
RTN3-209ENST00000538995 HOXA9P31269 272 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 ZXDAP98168 799 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 POU5F1Q01860 360 aaKnown RBP12.6□□□□□ -0.39
RTN3-209ENST00000538995 PPP2R3AQ06190 1150 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 ALCAMQ13740 583 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 LIN9Q5TKA1 542 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 SLFN12LQ6IEE8 588 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 KANK3Q6NY19 840 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 RTL10Q7L3V2 364 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 OTOP3Q7RTS5 596 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 ZNF720Q7Z2F6 126 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 SFR1Q86XK3 245 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 PALB2Q86YC2 1186 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 CD302Q8IX05 232 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 KREMEN2Q8NCW0 462 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 C3orf58Q8NDZ4 430 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 KCNG4Q8TDN1 519 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 STAMQ92783 540 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 ACSF2Q96CM8 615 aaPredicted RBP12.6□□□□□ -0.39
RTN3-209ENST00000538995 DNAJC19Q96DA6 116 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 LRRC27Q9C0I9 530 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 TNMDQ9H2S6 317 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms