RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W HLR1Q04429 423 aa5.27□□□□□ -1.57
CAF40YNL288W YMR252CQ04814 134 aa5.27□□□□□ -1.57
CAF40YNL288W FRE3Q08905 711 aa5.27□□□□□ -1.57
CAF40YNL288W TDH3P00359 332 aaKnown RBP RIP-Chip data5.26□□□□□ -1.57not detected
CAF40YNL288W MES1P00958 751 aaKnown RBP5.26□□□□□ -1.57
CAF40YNL288W SPS100P13130 326 aa5.26□□□□□ -1.57
CAF40YNL288W RPL24BP24000 155 aaKnown RBP5.26□□□□□ -1.57
CAF40YNL288W RPL5P26321 297 aaKnown RBP5.26□□□□□ -1.57
CAF40YNL288W RSM22P36056 628 aa5.26□□□□□ -1.57
CAF40YNL288W CTK2P46962 323 aa5.26□□□□□ -1.57
CAF40YNL288W YJL016WP47072 561 aa5.26□□□□□ -1.57
CAF40YNL288W YIP5P53108 310 aa5.26□□□□□ -1.57
CAF40YNL288W YNR048WP53740 393 aa5.26□□□□□ -1.57
CAF40YNL288W HHT1P61830 136 aa5.26□□□□□ -1.57
CAF40YNL288W SRL4Q03085 281 aa5.26□□□□□ -1.57
CAF40YNL288W RSM28Q03430 361 aa5.26□□□□□ -1.57
CAF40YNL288W MGR3Q04472 501 aa5.26□□□□□ -1.57
CAF40YNL288W FMP42Q04991 504 aa5.26□□□□□ -1.57
CAF40YNL288W NCE102Q12207 173 aaRIP-Chip data5.26□□□□□ -1.57not detected
CAF40YNL288W USB1Q12208 290 aaKnown RBP5.26□□□□□ -1.57
CAF40YNL288W YLR099W-AQ3E798 87 aa5.26□□□□□ -1.57
CAF40YNL288W COX5BP00425 151 aa5.25□□□□□ -1.57
CAF40YNL288W MET3P08536 511 aa5.25□□□□□ -1.57
CAF40YNL288W RPS23AP0CX29 145 aaKnown RBP5.25□□□□□ -1.57
CAF40YNL288W RPS23BP0CX30 145 aa5.25□□□□□ -1.57
CAF40YNL288W MATALPHA1P0CY06 175 aa5.25□□□□□ -1.57
CAF40YNL288W HMLALPHA1P0CY07 175 aa5.25□□□□□ -1.57
CAF40YNL288W ARO3P14843 370 aaKnown RBP5.25□□□□□ -1.57
CAF40YNL288W PCL1P24867 279 aa5.25□□□□□ -1.57
CAF40YNL288W AFG1P32317 509 aa5.25□□□□□ -1.57
CAF40YNL288W SFK1P35735 353 aa5.25□□□□□ -1.57
CAF40YNL288W SHE2P36068 246 aaKnown RBP RIP-Chip data5.25□□□□□ -1.57not detected
CAF40YNL288W JLP2P40206 208 aa5.25□□□□□ -1.57
CAF40YNL288W ERJ5P43613 295 aaPredicted RBP5.25□□□□□ -1.57
CAF40YNL288W LYS20P48570 428 aaKnown RBP5.25□□□□□ -1.57
CAF40YNL288W UBC13P52490 153 aa5.25□□□□□ -1.57
CAF40YNL288W PXR1P53335 271 aaPredicted RBP5.25□□□□□ -1.57
CAF40YNL288W CIK1Q01649 594 aa5.25□□□□□ -1.57
CAF40YNL288W TDA1Q03533 586 aa5.25□□□□□ -1.57
CAF40YNL288W DLT1Q04216 342 aa5.25□□□□□ -1.57
CAF40YNL288W PEX30Q06169 523 aa5.25□□□□□ -1.57
CAF40YNL288W GPN3Q06543 272 aa5.25□□□□□ -1.57
CAF40YNL288W PML1Q07930 204 aaPredicted RBP5.25□□□□□ -1.57
CAF40YNL288W LYS21Q12122 440 aaKnown RBP5.25□□□□□ -1.57
CAF40YNL288W RNH203Q12338 110 aa5.25□□□□□ -1.57
CAF40YNL288W ISA2Q12425 185 aa5.25□□□□□ -1.57
CAF40YNL288W ADK1P07170 222 aaKnown RBP5.24□□□□□ -1.57
CAF40YNL288W DPB2P24482 689 aaPredicted RBP5.24□□□□□ -1.57
CAF40YNL288W DEG1P31115 442 aaKnown RBP5.24□□□□□ -1.57
CAF40YNL288W DBF20P32328 564 aa5.24□□□□□ -1.57
CAF40YNL288W SPC29P33419 253 aa5.24□□□□□ -1.57
CAF40YNL288W GPX2P38143 162 aa5.24□□□□□ -1.57
CAF40YNL288W SSH1P38353 490 aaKnown RBP5.24□□□□□ -1.57
CAF40YNL288W PAM16P42949 149 aa5.24□□□□□ -1.57
CAF40YNL288W BNA6P43619 295 aa5.24□□□□□ -1.57
CAF40YNL288W CRZ1P53968 678 aa5.24□□□□□ -1.57
CAF40YNL288W GPI17Q04080 534 aa5.24□□□□□ -1.57
CAF40YNL288W MCM21Q06675 368 aa5.24□□□□□ -1.57
CAF40YNL288W RFU1Q08003 200 aa5.24□□□□□ -1.57
CAF40YNL288W RRS1Q08746 203 aaKnown RBP5.24□□□□□ -1.57
CAF40YNL288W GCN4P03069 281 aa5.23□□□□□ -1.57
CAF40YNL288W RPL6BP05739 176 aaKnown RBP5.23□□□□□ -1.57
CAF40YNL288W RPL30P14120 105 aaKnown RBP5.23□□□□□ -1.57
CAF40YNL288W GLC7P32598 312 aaKnown RBP5.23□□□□□ -1.57
CAF40YNL288W SNC2P33328 115 aa5.23□□□□□ -1.57
CAF40YNL288W MCH2P36032 473 aa5.23□□□□□ -1.57
CAF40YNL288W RCN1P36054 211 aa5.23□□□□□ -1.57
CAF40YNL288W FAT1P38225 669 aa5.23□□□□□ -1.57
CAF40YNL288W ARC40P38328 384 aaKnown RBP5.23□□□□□ -1.57
CAF40YNL288W FLX1P40464 311 aa5.23□□□□□ -1.57
CAF40YNL288W QRI1P43123 477 aaKnown RBP5.23□□□□□ -1.57
CAF40YNL288W ATG18P43601 500 aa5.23□□□□□ -1.57
CAF40YNL288W RPS0BP46654 252 aaKnown RBP5.23□□□□□ -1.57
CAF40YNL288W IMO32P53219 342 aa5.23□□□□□ -1.57
CAF40YNL288W YDC1Q02896 317 aa5.23□□□□□ -1.57
CAF40YNL288W YMR130WQ04223 302 aa5.23□□□□□ -1.57
CAF40YNL288W YPR098CQ06089 161 aa5.23□□□□□ -1.57
CAF40YNL288W SRL2Q12020 392 aa5.23□□□□□ -1.57
CAF40YNL288W DIF1O13577 133 aa5.22□□□□□ -1.57
CAF40YNL288W SPS4P09937 338 aa5.22□□□□□ -1.57
CAF40YNL288W PDA1P16387 420 aaKnown RBP5.22□□□□□ -1.57
CAF40YNL288W ERG24P32462 438 aaKnown RBP5.22□□□□□ -1.57
CAF40YNL288W PPZ2P33329 710 aa5.22□□□□□ -1.57
CAF40YNL288W UTP11P34247 250 aaPredicted RBP5.22□□□□□ -1.57
CAF40YNL288W TMA19P35691 167 aaKnown RBP5.22□□□□□ -1.57
CAF40YNL288W ARO9P38840 513 aaPredicted RBP5.22□□□□□ -1.57
CAF40YNL288W SMB1P40018 196 aaKnown RBP5.22□□□□□ -1.57
CAF40YNL288W OST1P41543 476 aaKnown RBP5.22□□□□□ -1.57
CAF40YNL288W BLM10P43583 2143 aa5.22□□□□□ -1.57
CAF40YNL288W YJR120WP47157 116 aa5.22□□□□□ -1.57
CAF40YNL288W DOC1P53068 250 aa5.22□□□□□ -1.57
CAF40YNL288W YGL159WP53110 370 aa5.22□□□□□ -1.57
CAF40YNL288W POP6P53218 158 aa5.22□□□□□ -1.57
CAF40YNL288W SCW4P53334 386 aaKnown RBP5.22□□□□□ -1.57
CAF40YNL288W CPR8P53728 308 aa5.22□□□□□ -1.57
CAF40YNL288W SKO1Q02100 647 aa5.22□□□□□ -1.57
CAF40YNL288W YPL077CQ02831 240 aa5.22□□□□□ -1.57
CAF40YNL288W YMR279CQ03263 540 aa5.22□□□□□ -1.57
CAF40YNL288W MSS11Q03825 758 aa5.22□□□□□ -1.57
CAF40YNL288W ASR1Q06834 288 aa5.22□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 75.3 ms