RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeastyeast

Gene SHH4, Length 507 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHH4YLR164W NAM2P11325 894 aa8.64□□□□□ -1.03
SHH4YLR164W ARO3P14843 370 aaKnown RBP8.64□□□□□ -1.03
SHH4YLR164W YND1P40009 630 aa8.64□□□□□ -1.03
SHH4YLR164W HAS1Q03532 505 aaKnown RBP8.64□□□□□ -1.03
SHH4YLR164W RNH203Q12338 110 aa8.64□□□□□ -1.03
SHH4YLR164W TDH3P00359 332 aaKnown RBP RIP-Chip data8.63□□□□□ -1.03not detected
SHH4YLR164W CHO1P08456 276 aa8.63□□□□□ -1.03
SHH4YLR164W SPS2P08459 502 aa8.63□□□□□ -1.03
SHH4YLR164W RPL30P14120 105 aaKnown RBP8.63□□□□□ -1.03
SHH4YLR164W DEG1P31115 442 aaKnown RBP8.63□□□□□ -1.03
SHH4YLR164W VAM7P32912 316 aa8.63□□□□□ -1.03
SHH4YLR164W YBR096WP38256 230 aa8.63□□□□□ -1.03
SHH4YLR164W FLX1P40464 311 aa8.63□□□□□ -1.03
SHH4YLR164W OST1P41543 476 aaKnown RBP8.63□□□□□ -1.03
SHH4YLR164W NSA1P53136 463 aaPredicted RBP8.63□□□□□ -1.03
SHH4YLR164W YPL077CQ02831 240 aa8.63□□□□□ -1.03
SHH4YLR164W TY1A-MR1Q04215 440 aa8.63□□□□□ -1.03
SHH4YLR164W UTP15Q04305 513 aaKnown RBP8.63□□□□□ -1.03
SHH4YLR164W PRP8P33334 2413 aaKnown RBP8.62□□□□□ -1.03
SHH4YLR164W GRX2P17695 143 aaKnown RBP8.62□□□□□ -1.03
SHH4YLR164W YHL037CP38733 133 aa8.62□□□□□ -1.03
SHH4YLR164W AIM25P47140 327 aa8.62□□□□□ -1.03
SHH4YLR164W SIP18P50263 79 aa8.62□□□□□ -1.03
SHH4YLR164W AVT4P50944 713 aa8.62□□□□□ -1.03
SHH4YLR164W TYW3P53177 273 aa8.62□□□□□ -1.03
SHH4YLR164W YNR048WP53740 393 aa8.62□□□□□ -1.03
SHH4YLR164W YDR391CQ04170 232 aa8.62□□□□□ -1.03
SHH4YLR164W YLR031WQ07978 186 aa8.62□□□□□ -1.03
SHH4YLR164W COX17Q12287 69 aa8.62□□□□□ -1.03
SHH4YLR164W HUT1Q12520 339 aa8.62□□□□□ -1.03
SHH4YLR164W RAD52P06778 471 aaKnown RBP8.61□□□□□ -1.03
SHH4YLR164W MSI1P13712 422 aa8.61□□□□□ -1.03
SHH4YLR164W VMA5P31412 392 aaKnown RBP8.61□□□□□ -1.03
SHH4YLR164W PPQ1P32945 549 aa8.61□□□□□ -1.03
SHH4YLR164W SRL3P36167 246 aa8.61□□□□□ -1.03
SHH4YLR164W YBR242WP38331 238 aa8.61□□□□□ -1.03
SHH4YLR164W TOK1P40310 691 aa8.61□□□□□ -1.03
SHH4YLR164W AVT7P40501 490 aa8.61□□□□□ -1.03
SHH4YLR164W ALG12P53730 551 aa8.61□□□□□ -1.03
SHH4YLR164W TY1A-DR2Q03964 440 aaKnown RBP8.61□□□□□ -1.03
SHH4YLR164W ERP4Q12450 207 aa8.61□□□□□ -1.03
SHH4YLR164W URA6P15700 204 aa8.6□□□□□ -1.03
SHH4YLR164W RNA14P25298 677 aaKnown RBP8.6□□□□□ -1.03
SHH4YLR164W GLC7P32598 312 aaKnown RBP8.6□□□□□ -1.03
SHH4YLR164W YBL010CP32788 280 aa8.6□□□□□ -1.03
SHH4YLR164W FIG1P38224 298 aa8.6□□□□□ -1.03
SHH4YLR164W SOL3P38858 249 aa8.6□□□□□ -1.03
SHH4YLR164W YIP5P53108 310 aa8.6□□□□□ -1.03
SHH4YLR164W MRPS16Q02608 121 aa8.6□□□□□ -1.03
SHH4YLR164W NGL2Q03264 515 aaKnown RBP8.6□□□□□ -1.03
SHH4YLR164W MRL1Q06815 381 aa8.6□□□□□ -1.03
SHH4YLR164W SRL2Q12020 392 aa8.6□□□□□ -1.03
SHH4YLR164W TGS1Q12052 315 aa8.6□□□□□ -1.03
SHH4YLR164W TDH2P00358 332 aaKnown RBP8.59□□□□□ -1.03
SHH4YLR164W CDC28P00546 298 aaKnown RBP8.59□□□□□ -1.03
SHH4YLR164W SAG1P20840 650 aa8.59□□□□□ -1.03
SHH4YLR164W NAB2P32505 525 aaKnown RBP RIP-Chip data8.59□□□□□ -1.03not detected
SHH4YLR164W REC114P32841 428 aa8.59□□□□□ -1.03
SHH4YLR164W YKL063CP35725 167 aa8.59□□□□□ -1.03
SHH4YLR164W MCH2P36032 473 aa8.59□□□□□ -1.03
SHH4YLR164W MRPL36P36531 177 aa8.59□□□□□ -1.03
SHH4YLR164W UFD1P53044 361 aa8.59□□□□□ -1.03
SHH4YLR164W HNT1Q04344 158 aaKnown RBP8.59□□□□□ -1.03
SHH4YLR164W YPR196WQ06595 470 aa8.59□□□□□ -1.03
SHH4YLR164W RSC58Q07979 502 aa8.59□□□□□ -1.03
SHH4YLR164W REP2P03872 296 aa8.58□□□□□ -1.04
SHH4YLR164W NHP6BP11633 99 aaKnown RBP8.58□□□□□ -1.04
SHH4YLR164W HNM1P19807 563 aa8.58□□□□□ -1.04
SHH4YLR164W RFA1P22336 621 aaKnown RBP8.58□□□□□ -1.04
SHH4YLR164W CDC39P25655 2108 aaKnown RBP8.58□□□□□ -1.04
SHH4YLR164W CLB6P32943 380 aa8.58□□□□□ -1.04
SHH4YLR164W MRPL27P36526 146 aaPredicted RBP8.58□□□□□ -1.04
SHH4YLR164W MID1P41821 548 aa8.58□□□□□ -1.04
SHH4YLR164W NRG1Q03125 231 aa8.58□□□□□ -1.04
SHH4YLR164W SPR28Q04921 423 aa8.58□□□□□ -1.04
SHH4YLR164W RRS1Q08746 203 aaKnown RBP8.58□□□□□ -1.04
SHH4YLR164W YLL053CP0CD98 152 aa8.57□□□□□ -1.04
SHH4YLR164W RPL35AP0CX84 120 aaKnown RBP8.57□□□□□ -1.04
SHH4YLR164W RPL35BP0CX85 120 aaKnown RBP8.57□□□□□ -1.04
SHH4YLR164W FMT1P32785 401 aa8.57□□□□□ -1.04
SHH4YLR164W PIG2P40187 538 aa8.57□□□□□ -1.04
SHH4YLR164W YIL029CP40538 142 aa8.57□□□□□ -1.04
SHH4YLR164W OKP1P53298 406 aa8.57□□□□□ -1.04
SHH4YLR164W DLT1Q04216 342 aa8.57□□□□□ -1.04
SHH4YLR164W MRX9Q07349 420 aaKnown RBP8.57□□□□□ -1.04
SHH4YLR164W GAT3Q07928 141 aa8.57□□□□□ -1.04
SHH4YLR164W RFU1Q08003 200 aa8.57□□□□□ -1.04
SHH4YLR164W YOR385WQ08909 290 aa8.57□□□□□ -1.04
SHH4YLR164W USB1Q12208 290 aaKnown RBP8.57□□□□□ -1.04
SHH4YLR164W SCM3Q12334 223 aa8.57□□□□□ -1.04
SHH4YLR164W AAC1P04710 309 aa8.56□□□□□ -1.04
SHH4YLR164W GCN3P14741 305 aa8.56□□□□□ -1.04
SHH4YLR164W CDC23P16522 626 aa8.56□□□□□ -1.04
SHH4YLR164W MRPL3P36516 390 aa8.56□□□□□ -1.04
SHH4YLR164W ARC40P38328 384 aaKnown RBP8.56□□□□□ -1.04
SHH4YLR164W YER079WP40052 210 aaKnown RBP8.56□□□□□ -1.04
SHH4YLR164W GWT1P47026 490 aa8.56□□□□□ -1.04
SHH4YLR164W ARG5,6Q01217 863 aa8.56□□□□□ -1.04
SHH4YLR164W VBA1Q04301 562 aa8.56□□□□□ -1.04
SHH4YLR164W YTH1Q06102 208 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 5,963 RNA–protein pairs in 35.1 ms