RNA–Protein interactions for RNA: ENST00000351288.10

SMPD4-201, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2 BASIC

Gene SMPD4, Length 3,661 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-201ENST00000351288 SPIRE2Q8WWL2 714 aa11.14□□□□□ -0.63
SMPD4-201ENST00000351288 PRPF31Q8WWY3 499 aaKnown RBP11.14□□□□□ -0.63
SMPD4-201ENST00000351288 PSPC1Q8WXF1 523 aaKnown RBP11.14□□□□□ -0.63
SMPD4-201ENST00000351288 TEPSINQ96N21 525 aa11.14□□□□□ -0.63
SMPD4-201ENST00000351288 PCDHB18PQ96TA0 734 aa11.14□□□□□ -0.63
SMPD4-201ENST00000351288 AGPAT1Q99943 283 aa11.14□□□□□ -0.63
SMPD4-201ENST00000351288 ADAM33Q9BZ11 813 aa11.14□□□□□ -0.63
SMPD4-201ENST00000351288 ASCC2Q9H1I8 757 aaPredicted RBP11.14□□□□□ -0.63
SMPD4-201ENST00000351288 ATRNL1Q5VV63 1379 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 FRMPD4Q14CM0 1322 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 GJB6O95452 261 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 NEFHP12036 1026 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 FGFR4P22455 802 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 SCYL2Q6P3W7 929 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 SCFD2Q8WU76 684 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 BSNDQ8WZ55 320 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 SEMA4DQ92854 862 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 CAVIN3Q969G5 261 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 NUP85Q9BW27 656 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 RAB20Q9NX57 234 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 CEP83Q9Y592 693 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 PI4K2BG5E9Z4 385 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 H0YHG0 523 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 TBC1D12O60347 775 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 LSP1P33241 339 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 SV2AQ7L0J3 742 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 OLIG1Q8TAK6 271 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 RNF25Q96BH1 459 aaPredicted RBP11.13□□□□□ -0.63
SMPD4-201ENST00000351288 SH3GL2Q99962 352 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 TMEM117Q9H0C3 514 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 LTBP1Q14766 1721 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 NRXN2Q9P2S2 1712 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 EPHX2P34913 555 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 MAGOHP61326 146 aaKnown RBP11.13□□□□□ -0.63
SMPD4-201ENST00000351288 ITIH3Q06033 890 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 ALS2CLQ60I27 953 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 SCARA3Q6AZY7 606 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 ANKRD13AQ8IZ07 590 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 SEPT1Q8WYJ6 367 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 MLXIPLQ9NP71 852 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 MTUS1Q9ULD2 1270 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 AGTPBP1Q9UPW5 1226 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 UBIAD1Q9Y5Z9 338 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 BRWD3Q6RI45 1802 aa11.13□□□□□ -0.63
SMPD4-201ENST00000351288 EIF3DO15371 548 aaKnown RBP eCLIP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 SLC16A3O15427 465 aaKnown RBP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 MYZAPP0CAP1 466 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 PRKCIP41743 596 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 NFX1Q12986 1120 aaKnown RBP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 CALCOCO2Q13137 446 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 PPP2R5AQ15172 486 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 BMT2Q1RMZ1 405 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 PRUNE1Q86TP1 453 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 NOP9Q86U38 636 aaKnown RBP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 ZDHHC14Q8IZN3 488 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 GPC2Q8N158 579 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 C1orf54Q8WWF1 131 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 RFFLQ8WZ73 363 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 CDCA5Q96FF9 252 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 ISCUQ9H1K1 167 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 PDGFCQ9NRA1 345 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 HLA-DRAP01903 254 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 ZNF286BP0CG31 522 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 COMTP21964 271 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 MMP14P50281 582 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 NLRP11P59045 1033 aaKnown RBP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 ZNF844Q08AG5 666 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 IFT88Q13099 833 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 NEDD9Q14511 834 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 CDO1Q16878 200 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 GLE1Q53GS7 698 aaKnown RBP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 SYCP2LQ5T4T6 812 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 CATSPERGQ6ZRH7 1159 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 FBXO25Q8TCJ0 367 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 MGARPQ8TDB4 240 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 PBKQ96KB5 322 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 ATP6V1G3Q96LB4 118 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 PWWP2AQ96N64 755 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 ADARB2Q9NS39 739 aaKnown RBP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 BTBD7Q9P203 1132 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 SUCLA2Q9P2R7 463 aaPredicted RBP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 VTNP04004 478 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 OATP04181 439 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 GUCY2CP25092 1073 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 HSD17B4P51659 736 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 DR1Q01658 176 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 DRP2Q13474 957 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 WDR72Q3MJ13 1102 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 HSDL1Q3SXM5 330 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 MSL3Q8N5Y2 521 aaKnown RBP11.12□□□□□ -0.63
SMPD4-201ENST00000351288 ATG4AQ8WYN0 398 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 PLVAPQ9BX97 442 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 ADAM22Q9P0K1 906 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 TMEM59LQ9UK28 342 aa11.12□□□□□ -0.63
SMPD4-201ENST00000351288 CCL15-CCL14A0A0B4J2E2 113 aa11.11□□□□□ -0.63
SMPD4-201ENST00000351288 DYNC1LI2O43237 492 aaPredicted RBP11.11□□□□□ -0.63
SMPD4-201ENST00000351288 USP2O75604 605 aaPredicted RBP11.11□□□□□ -0.63
SMPD4-201ENST00000351288 SUPT20HL2P0C7V6 817 aa11.11□□□□□ -0.63
SMPD4-201ENST00000351288 YARSP54577 528 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms