RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	SOL2	P37262	315 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	OXA1	P39952	402 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	AIM10	P39965	576 aa	Known RBP	3.97	□□□□□ -1.77
CAF16	YFL028C	UTP18	P40362	594 aa	Predicted RBP	3.97	□□□□□ -1.77
CAF16	YFL028C	CIS3	P47001	227 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	AIF1	P52923	378 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	OKP1	P53298	406 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	MKC7	P53379	596 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	RCF2	P53721	224 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	MPP6	P53725	186 aa	Predicted RBP	3.97	□□□□□ -1.77
CAF16	YFL028C	ZRG17	P53735	605 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	HPT1	Q04178	221 aa	Known RBP	3.97	□□□□□ -1.77
CAF16	YFL028C	FSH2	Q05015	223 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	GAS2	Q06135	555 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	SIA1	Q12212	622 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	PST1	Q12355	444 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	RPN6	Q12377	434 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	ADH2	P00331	348 aa	Known RBP	3.96	□□□□□ -1.78
CAF16	YFL028C	CBS2	P14905	389 aa		3.96	□□□□□ -1.78
CAF16	YFL028C	RPB4	P20433	221 aa	Predicted RBP	3.96	□□□□□ -1.78
CAF16	YFL028C	SCL1	P21243	252 aa	Known RBP	3.96	□□□□□ -1.78
CAF16	YFL028C	MIR1	P23641	311 aa	Known RBP	3.96	□□□□□ -1.78
CAF16	YFL028C	YCR090C	P25654	182 aa	Known RBP	3.96	□□□□□ -1.78
CAF16	YFL028C	PMT2	P31382	759 aa		3.96	□□□□□ -1.78
CAF16	YFL028C	DED81	P38707	554 aa	Known RBP	3.96	□□□□□ -1.78
CAF16	YFL028C	YHR045W	P38775	560 aa		3.96	□□□□□ -1.78
CAF16	YFL028C	LSM12	P38828	187 aa	Known RBP	3.96	□□□□□ -1.78
CAF16	YFL028C	COA1	P40452	197 aa		3.96	□□□□□ -1.78
CAF16	YFL028C	COX16	P47081	118 aa		3.96	□□□□□ -1.78
CAF16	YFL028C	RMI1	Q02685	241 aa		3.96	□□□□□ -1.78
CAF16	YFL028C	NHP10	Q03435	203 aa		3.96	□□□□□ -1.78
CAF16	YFL028C	YTH1	Q06102	208 aa	Predicted RBP	3.96	□□□□□ -1.78
CAF16	YFL028C	RRT8	Q08219	342 aa		3.96	□□□□□ -1.78
CAF16	YFL028C	RPN8	Q08723	338 aa	Known RBP	3.96	□□□□□ -1.78
CAF16	YFL028C	PPH21	P23594	369 aa		3.95	□□□□□ -1.78
CAF16	YFL028C	SWD2	P36104	329 aa	Predicted RBP	3.95	□□□□□ -1.78
CAF16	YFL028C	YBR062C	P38239	180 aa		3.95	□□□□□ -1.78
CAF16	YFL028C	YHB1	P39676	399 aa	Known RBP	3.95	□□□□□ -1.78
CAF16	YFL028C	NPT1	P39683	429 aa	Known RBP	3.95	□□□□□ -1.78
CAF16	YFL028C	GIM4	P40005	111 aa	Known RBP	3.95	□□□□□ -1.78
CAF16	YFL028C	YRB1	P41920	201 aa	Known RBP	3.95	□□□□□ -1.78
CAF16	YFL028C	SEH1	P53011	349 aa	Known RBP	3.95	□□□□□ -1.78
CAF16	YFL028C	YGR266W	P53326	701 aa		3.95	□□□□□ -1.78
CAF16	YFL028C	TVP15	Q03860	143 aa		3.95	□□□□□ -1.78
CAF16	YFL028C	YML096W	Q04489	525 aa		3.95	□□□□□ -1.78
CAF16	YFL028C	SEC10	Q06245	871 aa		3.95	□□□□□ -1.78
CAF16	YFL028C	YOL019W	Q08157	551 aa		3.95	□□□□□ -1.78
CAF16	YFL028C	ATP16	Q12165	160 aa		3.95	□□□□□ -1.78
CAF16	YFL028C	MCT1	Q12283	360 aa		3.95	□□□□□ -1.78
CAF16	YFL028C	NOT5	Q12514	560 aa	Predicted RBP	3.95	□□□□□ -1.78
CAF16	YFL028C	SAL1	D6W196	494 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	SPS100	P13130	326 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	MGM101	P32787	269 aa	Known RBP	3.94	□□□□□ -1.78
CAF16	YFL028C	SWD3	P38123	315 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	YHR127W	P38833	243 aa	Known RBP	3.94	□□□□□ -1.78
CAF16	YFL028C	MIG3	P39943	394 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	MOB2	P43563	287 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	YPI1	P43587	155 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	KEL2	P50090	882 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	EFM5	P53200	248 aa	Known RBP	3.94	□□□□□ -1.78
CAF16	YFL028C	YGR015C	P53208	328 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	SUR7	P54003	302 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	LSM3	P57743	89 aa	Known RBP	3.94	□□□□□ -1.78
CAF16	YFL028C	SKI8	Q02793	397 aa	Predicted RBP	3.94	□□□□□ -1.78
CAF16	YFL028C	RRN5	Q02983	363 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	GAS3	Q03655	524 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	LIP2	Q06005	328 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	BCP1	Q06338	283 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	PRP46	Q12417	451 aa	Predicted RBP	3.94	□□□□□ -1.78
CAF16	YFL028C	IRA1	P18963	3092 aa		3.94	□□□□□ -1.78
CAF16	YFL028C	BRR2	P32639	2163 aa	Known RBP	3.93	□□□□□ -1.78
CAF16	YFL028C	REP1	P03871	373 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	SPT3	P06844	337 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	RPL40A	P0CH08	128 aa	Known RBP	3.93	□□□□□ -1.78
CAF16	YFL028C	RPL40B	P0CH09	128 aa	Known RBP	3.93	□□□□□ -1.78
CAF16	YFL028C	RSR1	P13856	272 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	NMT1	P14743	455 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	GIT1	P25346	518 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	LDS1	P31379	325 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	COS9	P36034	407 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	PEX22	P39718	180 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	YJR149W	P47177	404 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	SLM2	P53955	656 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	RHO3	Q00245	231 aa	Known RBP	3.93	□□□□□ -1.78
CAF16	YFL028C	PRP38	Q00723	242 aa	Predicted RBP	3.93	□□□□□ -1.78
CAF16	YFL028C	MRS2	Q01926	470 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	YET2	Q04210	160 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	YLL007C	Q07799	665 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	RRG7	Q08774	242 aa	Predicted RBP	3.93	□□□□□ -1.78
CAF16	YFL028C	RRP42	Q12277	265 aa	Predicted RBP	3.93	□□□□□ -1.78
CAF16	YFL028C	SFM1	Q12314	213 aa		3.93	□□□□□ -1.78
CAF16	YFL028C	MDM35	O60200	86 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	UNG1	P12887	359 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	CTA1	P15202	515 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	RVS161	P25343	265 aa	Known RBP	3.92	□□□□□ -1.78
CAF16	YFL028C	RPS1A	P33442	255 aa	Known RBP	3.92	□□□□□ -1.78
CAF16	YFL028C	TPO5	P36029	618 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	TRM7	P38238	310 aa	Known RBP	3.92	□□□□□ -1.78
CAF16	YFL028C	HSM3	P38348	480 aa		3.92	□□□□□ -1.78
CAF16	YFL028C	YHR035W	P38769	630 aa		3.92	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 419.8 ms