RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeastyeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC4YFL005W BMH1P29311 267 aaKnown RBP2.3□□□□□ -2.04
SEC4YFL005W HEK2P38199 381 aaKnown RBP RIP-Chip data2.3□□□□□ -2.04not detected
SEC4YFL005W NBP1P52919 319 aaPredicted RBP2.3□□□□□ -2.04
SEC4YFL005W AAH1P53909 347 aa2.3□□□□□ -2.04
SEC4YFL005W YNL134CP53912 376 aaKnown RBP2.3□□□□□ -2.04
SEC4YFL005W YDR209CQ03480 137 aa2.3□□□□□ -2.04
SEC4YFL005W PEX10Q05568 337 aa2.3□□□□□ -2.04
SEC4YFL005W YPS3Q12303 508 aa2.3□□□□□ -2.04
SEC4YFL005W YPL119C-AQ3E751 87 aa2.3□□□□□ -2.04
SEC4YFL005W YBL112CQ3E7Y4 105 aa2.3□□□□□ -2.04
SEC4YFL005W NUP157P40064 1391 aaKnown RBP2.3□□□□□ -2.04
SEC4YFL005W PAN1P32521 1480 aa2.29□□□□□ -2.04
SEC4YFL005W YPR096CO13587 100 aa2.29□□□□□ -2.04
SEC4YFL005W HIS3P06633 220 aa2.29□□□□□ -2.04
SEC4YFL005W MET2P08465 486 aa2.29□□□□□ -2.04
SEC4YFL005W POX1P13711 748 aa2.29□□□□□ -2.04
SEC4YFL005W CAB3P36076 571 aa2.29□□□□□ -2.04
SEC4YFL005W YHR045WP38775 560 aa2.29□□□□□ -2.04
SEC4YFL005W SMB1P40018 196 aaKnown RBP2.29□□□□□ -2.04
SEC4YFL005W BNA6P43619 295 aa2.29□□□□□ -2.04
SEC4YFL005W YJL144WP47009 104 aa2.29□□□□□ -2.04
SEC4YFL005W YGL088WP53151 121 aa2.29□□□□□ -2.04
SEC4YFL005W SMT3Q12306 101 aaKnown RBP2.29□□□□□ -2.04
SEC4YFL005W RNA15P25299 296 aaPredicted RBP2.28□□□□□ -2.04
SEC4YFL005W RSA4P25382 515 aaKnown RBP2.28□□□□□ -2.04
SEC4YFL005W HOM6P31116 359 aaKnown RBP2.28□□□□□ -2.04
SEC4YFL005W JEN1P36035 616 aa2.28□□□□□ -2.04
SEC4YFL005W AGX1P43567 385 aa2.28□□□□□ -2.04
SEC4YFL005W NIF3P53081 288 aa2.28□□□□□ -2.04
SEC4YFL005W SRL4Q03085 281 aa2.28□□□□□ -2.04
SEC4YFL005W YMR166CQ03829 368 aa2.28□□□□□ -2.04
SEC4YFL005W PLB3Q08108 686 aa2.28□□□□□ -2.04
SEC4YFL005W YOL019WQ08157 551 aa2.28□□□□□ -2.04
SEC4YFL005W CSM4Q08955 156 aa2.28□□□□□ -2.04
SEC4YFL005W MSH5Q12175 901 aa2.28□□□□□ -2.04
SEC4YFL005W RFM1Q12192 310 aa2.28□□□□□ -2.04
SEC4YFL005W YOR029WQ12243 111 aa2.28□□□□□ -2.04
SEC4YFL005W ATG31Q12421 196 aa2.28□□□□□ -2.04
SEC4YFL005W TDH2P00358 332 aaKnown RBP2.27□□□□□ -2.05
SEC4YFL005W TOM40P23644 387 aaKnown RBP2.27□□□□□ -2.05
SEC4YFL005W SPT8P38915 602 aa2.27□□□□□ -2.05
SEC4YFL005W TEM1P38987 245 aa2.27□□□□□ -2.05
SEC4YFL005W FMC1P40491 155 aa2.27□□□□□ -2.05
SEC4YFL005W GLG2P47011 380 aa2.27□□□□□ -2.05
SEC4YFL005W MRPL50P53724 139 aa2.27□□□□□ -2.05
SEC4YFL005W ASI3P53983 676 aa2.27□□□□□ -2.05
SEC4YFL005W TLG1Q03322 224 aa2.27□□□□□ -2.05
SEC4YFL005W FCF1Q05498 189 aaPredicted RBP2.27□□□□□ -2.05
SEC4YFL005W ATG17Q06410 417 aa2.27□□□□□ -2.05
SEC4YFL005W PAM18Q07914 168 aa2.27□□□□□ -2.05
SEC4YFL005W KRE1P17260 313 aa2.26□□□□□ -2.05
SEC4YFL005W MIG1P27705 504 aa2.26□□□□□ -2.05
SEC4YFL005W EHD3P28817 500 aa2.26□□□□□ -2.05
SEC4YFL005W SFC1P33303 322 aa2.26□□□□□ -2.05
SEC4YFL005W SDH4P37298 181 aa2.26□□□□□ -2.05
SEC4YFL005W YER084WP40057 128 aa2.26□□□□□ -2.05
SEC4YFL005W YJL028WP47062 111 aa2.26□□□□□ -2.05
SEC4YFL005W NUP84P52891 726 aa2.26□□□□□ -2.05
SEC4YFL005W CWC21Q03375 135 aaKnown RBP2.26□□□□□ -2.05
SEC4YFL005W KRE28Q04431 385 aa2.26□□□□□ -2.05
SEC4YFL005W FEX1Q08913 375 aa2.26□□□□□ -2.05
SEC4YFL005W FEX2Q08991 375 aa2.26□□□□□ -2.05
SEC4YFL005W NOT5Q12514 560 aaPredicted RBP2.26□□□□□ -2.05
SEC4YFL005W DPB2P24482 689 aaPredicted RBP2.25□□□□□ -2.05
SEC4YFL005W FZO1P38297 855 aa2.25□□□□□ -2.05
SEC4YFL005W LIA1P47120 325 aaKnown RBP2.25□□□□□ -2.05
SEC4YFL005W USE1P53146 245 aa2.25□□□□□ -2.05
SEC4YFL005W PET117Q02771 107 aa2.25□□□□□ -2.05
SEC4YFL005W BOP2Q06150 570 aa2.25□□□□□ -2.05
SEC4YFL005W COQ10Q08058 207 aa2.25□□□□□ -2.05
SEC4YFL005W HRT1Q08273 121 aa2.25□□□□□ -2.05
SEC4YFL005W YCT1Q12235 531 aa2.25□□□□□ -2.05
SEC4YFL005W YPL247CQ12523 523 aa2.25□□□□□ -2.05
SEC4YFL005W YBL008W-AQ3E821 79 aa2.25□□□□□ -2.05
SEC4YFL005W PPH21P23594 369 aa2.24□□□□□ -2.05
SEC4YFL005W GDH2P33327 1092 aaKnown RBP2.24□□□□□ -2.05
SEC4YFL005W DRE2P36152 348 aa2.24□□□□□ -2.05
SEC4YFL005W THO1P40040 218 aaKnown RBP2.24□□□□□ -2.05
SEC4YFL005W YJR141WP47172 347 aaPredicted RBP2.24□□□□□ -2.05
SEC4YFL005W YPR098CQ06089 161 aa2.24□□□□□ -2.05
SEC4YFL005W YPR147CQ06522 304 aaKnown RBP2.24□□□□□ -2.05
SEC4YFL005W RRS1Q08746 203 aaKnown RBP2.24□□□□□ -2.05
SEC4YFL005W TY3A-GQ12173 290 aa2.24□□□□□ -2.05
SEC4YFL005W PST1Q12355 444 aa2.24□□□□□ -2.05
SEC4YFL005W SNU23Q12368 194 aaPredicted RBP2.24□□□□□ -2.05
SEC4YFL005W AGC1Q12482 902 aa2.24□□□□□ -2.05
SEC4YFL005W TY3A-IQ99219 290 aa2.24□□□□□ -2.05
SEC4YFL005W SAC3P46674 1301 aa2.23□□□□□ -2.05
SEC4YFL005W YKR104WP0CE69 306 aa2.23□□□□□ -2.05
SEC4YFL005W RNP1P32385 249 aa2.23□□□□□ -2.05
SEC4YFL005W YKR032WP36127 104 aa2.23□□□□□ -2.05
SEC4YFL005W MAL32P38158 584 aa2.23□□□□□ -2.05
SEC4YFL005W ECM13P38195 257 aa2.23□□□□□ -2.05
SEC4YFL005W YBR096WP38256 230 aa2.23□□□□□ -2.05
SEC4YFL005W GOS1P38736 223 aa2.23□□□□□ -2.05
SEC4YFL005W SNZ3P43545 298 aa2.23□□□□□ -2.05
SEC4YFL005W MRH4P53166 561 aa2.23□□□□□ -2.05
SEC4YFL005W MAL12P53341 584 aa2.23□□□□□ -2.05
SEC4YFL005W CTF19Q02732 369 aa2.23□□□□□ -2.05
SEC4YFL005W EMI1Q04406 187 aa2.23□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 28.7 ms