RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PCF11	YDR228C	RPL4A	P10664	362 aa	Known RBP	0.76	□□□□□ -2.29
PCF11	YDR228C	SCL1	P21243	252 aa	Known RBP	0.76	□□□□□ -2.29
PCF11	YDR228C	MAL32	P38158	584 aa		0.76	□□□□□ -2.29
PCF11	YDR228C	PRM9	P39551	298 aa		0.76	□□□□□ -2.29
PCF11	YDR228C	OST2	P46964	130 aa		0.76	□□□□□ -2.29
PCF11	YDR228C	CIS3	P47001	227 aa		0.76	□□□□□ -2.29
PCF11	YDR228C	RPL4B	P49626	362 aa	Known RBP	0.76	□□□□□ -2.29
PCF11	YDR228C	MAL12	P53341	584 aa		0.76	□□□□□ -2.29
PCF11	YDR228C	GPN3	Q06543	272 aa		0.76	□□□□□ -2.29
PCF11	YDR228C	BER1	Q06688	274 aa	Known RBP	0.76	□□□□□ -2.29
PCF11	YDR228C	POM33	Q12164	279 aa		0.76	□□□□□ -2.29
PCF11	YDR228C	YOS9	Q99220	542 aa		0.76	□□□□□ -2.29
PCF11	YDR228C	RPC25	P35718	212 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	HIS2	P38635	335 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	GLE2	P40066	365 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	SWS2	P53937	143 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	MZM1	Q03429	123 aa	Predicted RBP	0.75	□□□□□ -2.29
PCF11	YDR228C	PST1	Q12355	444 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	MHT1	Q12525	324 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	FKS1	P38631	1876 aa	Known RBP	0.75	□□□□□ -2.29
PCF11	YDR228C	RPP0	P05317	312 aa	Known RBP	0.75	□□□□□ -2.29
PCF11	YDR228C	FBA1	P14540	359 aa	Known RBP	0.75	□□□□□ -2.29
PCF11	YDR228C	GPI12	P23797	304 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	YHL049C	P38722	271 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	PEX31	P53203	462 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	NUP49	Q02199	472 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	PRM15	Q03262	622 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	ABZ2	Q03266	374 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	VBA1	Q04301	562 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	PGC1	Q08959	321 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	DCN1	Q12395	269 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	EMP46	Q12396	444 aa		0.75	□□□□□ -2.29
PCF11	YDR228C	ILV1	P00927	576 aa	Known RBP	0.74	□□□□□ -2.29
PCF11	YDR228C	DSE2	P38844	325 aa		0.74	□□□□□ -2.29
PCF11	YDR228C	SFH1	Q06168	426 aa		0.74	□□□□□ -2.29
PCF11	YDR228C	VMA2	P16140	517 aa	Known RBP	0.73	□□□□□ -2.29
PCF11	YDR228C	TPM1	P17536	199 aa	Known RBP	0.73	□□□□□ -2.29
PCF11	YDR228C	YGL010W	P25338	174 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	PEX4	P29340	183 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	TDA11	P38854	504 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	KEL2	P50090	882 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	SLX9	P53251	210 aa	Predicted RBP	0.73	□□□□□ -2.29
PCF11	YDR228C	CDC14	Q00684	551 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	YDR286C	Q05530	114 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	YBR056W-A	I2HB52	66 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	DSF1	P0CX08	502 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	YNR073C	P0CX09	502 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	GCD2	P12754	651 aa	Predicted RBP	0.73	□□□□□ -2.29
PCF11	YDR228C	FRS2	P15625	503 aa	Known RBP	0.73	□□□□□ -2.29
PCF11	YDR228C	YKR045C	P36138	183 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	YBR220C	P38318	560 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	CTR2	P38865	189 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	MNN9	P39107	395 aa	Known RBP	0.73	□□□□□ -2.29
PCF11	YDR228C	BMT5	P40493	336 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	CPD1	P53314	239 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	MRPS8	Q03799	155 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	BCP1	Q06338	283 aa		0.73	□□□□□ -2.29
PCF11	YDR228C	PRS4	P38063	326 aa	Predicted RBP	0.72	□□□□□ -2.29
PCF11	YDR228C	UBR2	Q07963	1872 aa		0.72	□□□□□ -2.29
PCF11	YDR228C	Q0255	P03881	472 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	DDI2	P0CH63	225 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	DDI3	P0CH64	225 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	MDH2	P22133	377 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	ICL1	P28240	557 aa	Predicted RBP	0.71	□□□□□ -2.3
PCF11	YDR228C	CWP1	P28319	239 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	SWI3	P32591	825 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	POF1	P25576	258 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	RCN1	P36054	211 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	SPO19	Q03029	223 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	ARV1	Q06541	321 aa		0.71	□□□□□ -2.3
PCF11	YDR228C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.71	□□□□□ -2.3	not detected
PCF11	YDR228C	RPC40	P07703	335 aa	Known RBP	0.7	□□□□□ -2.3
PCF11	YDR228C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.7	□□□□□ -2.3	not detected
PCF11	YDR228C	PHO88	P38264	188 aa	Predicted RBP	0.7	□□□□□ -2.3
PCF11	YDR228C	AVT2	P39981	480 aa		0.7	□□□□□ -2.3
PCF11	YDR228C	ARC15	P40518	154 aa	RIP-Chip data	0.7	□□□□□ -2.3	not detected
PCF11	YDR228C	MNT4	P53745	580 aa		0.7	□□□□□ -2.3
PCF11	YDR228C	SLD7	Q08457	257 aa		0.7	□□□□□ -2.3
PCF11	YDR228C	AKR2	Q12013	749 aa		0.7	□□□□□ -2.3
PCF11	YDR228C	SPT7	P35177	1332 aa		0.7	□□□□□ -2.3
PCF11	YDR228C	COX5A	P00424	153 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	YHR032W-A	P0C5N6	59 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	CSM1	P25651	190 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	EBP2	P36049	427 aa	Known RBP	0.69	□□□□□ -2.3
PCF11	YDR228C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	0.69	□□□□□ -2.3	RIP-Chip
PCF11	YDR228C	COS8	P38723	381 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	YHR022C	P38763	256 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	SHC1	P39000	512 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	TIM21	P53220	239 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	LSB1	P53281	241 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	CYT2	Q00873	224 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	CTF19	Q02732	369 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	CTR3	Q06686	241 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	RPL2A	P0CX45	254 aa	Known RBP	0.69	□□□□□ -2.3
PCF11	YDR228C	RPL2B	P0CX46	254 aa	Known RBP	0.69	□□□□□ -2.3
PCF11	YDR228C	SEC22	P22214	214 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	YBR219C	P38317	127 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	YGL185C	P53100	379 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	YGL034C	P53186	121 aa		0.69	□□□□□ -2.3
PCF11	YDR228C	YNL260C	P53846	198 aa		0.69	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms