RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TIGD5Q53EQ6 642 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 NT5DC1Q5TFE4 455 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 PDE12Q6L8Q7 609 aaKnown RBP20.06■□□□□ 0.8
CLN3-259ENST00000637551 FOXD4L3Q6VB84 417 aaPredicted RBP20.06■□□□□ 0.8
CLN3-259ENST00000637551 MAP4K3Q8IVH8 894 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 PDILTQ8N807 584 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 HELQQ8TDG4 1101 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 CCDC34Q96HJ3 373 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 TMEM175Q9BSA9 504 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 EIF2AQ9BY44 585 aaKnown RBP20.06■□□□□ 0.8
CLN3-259ENST00000637551 TRIM9Q9C026 710 aa20.06■□□□□ 0.8
CLN3-259ENST00000637551 TYW1Q9NV66 732 aaKnown RBP20.06■□□□□ 0.8
CLN3-259ENST00000637551 XIRP2A4UGR9 3374 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 POLR2DO15514 142 aaKnown RBP20.05■□□□□ 0.8
CLN3-259ENST00000637551 PPP1R37O75864 691 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 ADGRE1Q14246 886 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 DHX8Q14562 1220 aaKnown RBP20.05■□□□□ 0.8
CLN3-259ENST00000637551 TMEM132AQ24JP5 1023 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 MPZL3Q6UWV2 235 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 STXBP4Q6ZWJ1 553 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 CCDC65Q8IXS2 484 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 COLGALT1Q8NBJ5 622 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 RNF169Q8NCN4 708 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 ZNF558Q96NG5 402 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 TSPAN18Q96SJ8 248 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 C7orf25Q9BPX7 421 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 TOPORSQ9NS56 1045 aaPredicted RBP20.05■□□□□ 0.8
CLN3-259ENST00000637551 TBC1D13Q9NVG8 400 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 MTCH2Q9Y6C9 303 aa20.05■□□□□ 0.8
CLN3-259ENST00000637551 NPHP3-ACAD11A0A0J9YXS1 232 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 PVALEFA0A1B0GWK0 134 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 EPOPA6NHQ4 379 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 SFI1A8K8P3 1242 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 K7ENM7 598 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 NPTXRO95502 500 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 GRM5P41594 1212 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 ALDH7A1P49419 539 aaKnown RBP20.04■□□□□ 0.8
CLN3-259ENST00000637551 GRIK3Q13003 919 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 GPM6BQ13491 265 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 PAN2Q504Q3 1202 aaKnown RBP20.04■□□□□ 0.8
CLN3-259ENST00000637551 ZNF720Q7Z2F6 126 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 CEP57L1Q8IYX8 460 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 DHX58Q96C10 678 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 STRA6Q9BX79 667 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 NXF3Q9H4D5 531 aaKnown RBP20.04■□□□□ 0.8
CLN3-259ENST00000637551 TBX20Q9UMR3 447 aa20.04■□□□□ 0.8
CLN3-259ENST00000637551 ARL5CA6NH57 179 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 ABLIM1O14639 778 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 EDN1P05305 212 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 PFKFB1P16118 471 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 GATMP50440 423 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 MCL1Q07820 350 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 DSC1Q08554 894 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 NOLC1Q14978 699 aaKnown RBP eCLIP20.03■□□□□ 0.8
CLN3-259ENST00000637551 CCDC85BQ15834 202 aaPredicted RBP20.03■□□□□ 0.8
CLN3-259ENST00000637551 ZNF568Q3ZCX4 644 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 KCNT2Q6UVM3 1135 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 LRRC55Q6ZSA7 311 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 MRPS27Q92552 414 aaKnown RBP20.03■□□□□ 0.8
CLN3-259ENST00000637551 NECAB3Q96P71 396 aaPredicted RBP20.03■□□□□ 0.8
CLN3-259ENST00000637551 CHMP5Q9NZZ3 219 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 PLAGL2Q9UPG8 496 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 EXOC7Q9UPT5 735 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 PCDHB13Q9Y5F0 798 aa20.03■□□□□ 0.8
CLN3-259ENST00000637551 TCF20Q9UGU0 1960 aaKnown RBP20.03■□□□□ 0.8
CLN3-259ENST00000637551 BRWD1Q9NSI6 2320 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 REV3LO60673 3130 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 HNRNPDLO14979 420 aaKnown RBP20.02■□□□□ 0.8
CLN3-259ENST00000637551 CLDN3O15551 220 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 NCK2O43639 380 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 BMP1P13497 986 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 RNASELQ05823 741 aaKnown RBP20.02■□□□□ 0.8
CLN3-259ENST00000637551 SLFN12LQ6IEE8 588 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 DYMQ7RTS9 669 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 SFR1Q86XK3 245 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 GDPD5Q8WTR4 605 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 LPPQ93052 612 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 PPP2R3CQ969Q6 453 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 CCDC94Q9BW85 323 aaPredicted RBP20.02■□□□□ 0.8
CLN3-259ENST00000637551 CDT1Q9H211 546 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 PANK4Q9NVE7 773 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 SPG21Q9NZD8 308 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 MTUS1Q9ULD2 1270 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 STYXL1Q9Y6J8 313 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 PLXNA4Q9HCM2 1894 aa20.02■□□□□ 0.8
CLN3-259ENST00000637551 UBE4BO95155 1302 aa20.02■□□□□ 0.79
CLN3-259ENST00000637551 PIEZO1Q92508 2521 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 TTLL13PA6NNM8 815 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 EIF3DO15371 548 aaKnown RBP eCLIP20.01■□□□□ 0.79
CLN3-259ENST00000637551 ACTN4O43707 911 aaKnown RBP20.01■□□□□ 0.79
CLN3-259ENST00000637551 NR1I2O75469 434 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 SYKP43405 635 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 CACNB1Q02641 598 aaPredicted RBP20.01■□□□□ 0.79
CLN3-259ENST00000637551 KRT17Q04695 432 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 EHHADHQ08426 723 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 XKR4Q5GH76 650 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 SPOUT1Q5T280 376 aaKnown RBP20.01■□□□□ 0.79
CLN3-259ENST00000637551 KANK3Q6NY19 840 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 UNC13DQ70J99 1090 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 SPRED2Q7Z698 418 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms