RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 TEX35Q5T0J7 233 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 MROH9Q5TGP6 573 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 PPP4R4Q6NUP7 873 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 RGMBQ6NW40 437 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 FBXO46Q6PJ61 603 aaPredicted RBP6.64□□□□□ -1.35
SMAD4-208ENST00000589706 DGKHQ86XP1 1220 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 KIF18AQ8NI77 898 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 PIP4K2CQ8TBX8 421 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 LMBR1Q8WVP7 490 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 TNPO1Q92973 898 aaKnown RBP6.64□□□□□ -1.35
SMAD4-208ENST00000589706 MTA3Q9BTC8 594 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 G6PC3Q9BUM1 346 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 SLC6A20Q9NP91 592 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 ACSS2Q9NR19 701 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 TPSG1Q9NRR2 321 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 OBP2AQ9NY56 170 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 PGAP2Q9UHJ9 254 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 DSEQ9UL01 958 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 RWDD3Q9Y3V2 267 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 B3GALT1Q9Y5Z6 326 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 SZT2Q5T011 3432 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 ARFGEF2Q9Y6D5 1785 aa6.64□□□□□ -1.35
SMAD4-208ENST00000589706 VSTM5A8MXK1 200 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 KRIT1O00522 736 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 PCDHGA12O60330 932 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 CLASP2O75122 1294 aaKnown RBP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 H2AFYO75367 372 aaKnown RBP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 LTFP02788 710 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 CYP17A1P05093 508 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 MKI67P46013 3256 aaKnown RBP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 GPR3P46089 330 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 CORO7P57737 925 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 GPS2Q13227 327 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 MTA1Q13330 715 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 AOC3Q16853 763 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 TTC31Q49AM3 519 aaPredicted RBP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 MINDY4Q4G0A6 757 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 FIGNQ5HY92 759 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 KIF24Q5T7B8 1368 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 CPZQ66K79 652 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 CAVIN1Q6NZI2 390 aaKnown RBP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 KSR2Q6VAB6 950 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 ANKRD23Q86SG2 305 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 SLCO6A1Q86UG4 719 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 RIOX2Q8IUF8 465 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 AMOTL1Q8IY63 956 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 NLGN4XQ8N0W4 816 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 FAM184AQ8NB25 1140 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 ZNF397Q8NF99 534 aaPredicted RBP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 UHMK1Q8TAS1 419 aaKnown RBP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 USP33Q8TEY7 942 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 LINC01599Q8WXQ3 324 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 DLG3Q92796 817 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 KIF1BPQ96EK5 621 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 HSPBAP1Q96EW2 488 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 MS4A5Q9H3V2 200 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 ZMAT4Q9H898 229 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 SP110Q9HB58 689 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 ADARB2Q9NS39 739 aaKnown RBP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 SRPK3Q9UPE1 567 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 ZBTB1Q9Y2K1 713 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 PCDHGA9Q9Y5G4 932 aaKnown RBP6.63□□□□□ -1.35
SMAD4-208ENST00000589706 PCDHGA8Q9Y5G5 932 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 PCDHGA7Q9Y5G6 932 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 PCDHGA6Q9Y5G7 932 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 PCDHGA3Q9Y5H0 932 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 PCDHGA2Q9Y5H1 932 aa6.63□□□□□ -1.35
SMAD4-208ENST00000589706 ST20-MTHFSA0A0A6YYL1 179 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 SMTNL1A8MU46 457 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 RNF225M0QZC1 329 aaPredicted RBP6.62□□□□□ -1.35
SMAD4-208ENST00000589706 NPHP1O15259 732 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 XPOTO43592 962 aaKnown RBP6.62□□□□□ -1.35
SMAD4-208ENST00000589706 HTATSF1O43719 755 aaKnown RBP6.62□□□□□ -1.35
SMAD4-208ENST00000589706 FOSL1P15407 271 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 VCAM1P19320 739 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 CD40P25942 277 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 PTX3P26022 381 aaPredicted RBP6.62□□□□□ -1.35
SMAD4-208ENST00000589706 KIR2DL1P43626 348 aaPredicted RBP6.62□□□□□ -1.35
SMAD4-208ENST00000589706 KIR2DL2P43627 348 aaPredicted RBP6.62□□□□□ -1.35
SMAD4-208ENST00000589706 MTHFSP49914 203 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 IRX1P78414 480 aaPredicted RBP6.62□□□□□ -1.35
SMAD4-208ENST00000589706 NUCB2P80303 420 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 PRKCQQ04759 706 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 DUSP4Q13115 394 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 PDCD1Q15116 288 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 CLUL1Q15846 466 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 SYCP2LQ5T4T6 812 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 CC2D1AQ6P1N0 951 aaPredicted RBP6.62□□□□□ -1.35
SMAD4-208ENST00000589706 LRSAM1Q6UWE0 723 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 DLK2Q6UY11 383 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 FRMD7Q6ZUT3 714 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 ZZZ3Q8IYH5 903 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 CMTR2Q8IYT2 770 aaKnown RBP6.62□□□□□ -1.35
SMAD4-208ENST00000589706 LZTR1Q8N653 840 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 IQUBQ8NA54 791 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 CNBD1Q8NA66 436 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 CLIP3Q96DZ5 547 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 CD244Q9BZW8 370 aa6.62□□□□□ -1.35
SMAD4-208ENST00000589706 GPRC5DQ9NZD1 345 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms