RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 IFIT2P09913 472 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 ARAFP10398 606 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 HOXD8P13378 290 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 YBX3P16989 372 aaKnown RBP eCLIP5.24□□□□□ -1.571e-6■■□□□ 11.8
CCDC88A-209ENST00000456975 ZFXP17010 805 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 DESP17661 470 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 GALNSP34059 522 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 RXRGP48443 463 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 KRT83P78385 493 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 GPLD1P80108 840 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 APBA1Q02410 837 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 GBE1Q04446 702 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 CUL4BQ13620 913 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 KIF22Q14807 665 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 SF1Q15637 639 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 CRY1Q16526 586 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 KRT71Q3SY84 523 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 METTL11BQ5VVY1 283 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 TXNDC11Q6PKC3 985 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 RUFY3Q7L099 469 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 GALNT5Q7Z7M9 940 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 C12orf40Q86WS4 652 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 PASD1Q8IV76 773 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 TCEAL8Q8IYN2 117 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 TAB3Q8N5C8 712 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 KCNH5Q8NCM2 988 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 FNIP1Q8TF40 1166 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 PPP1R14BQ96C90 147 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 SAAL1Q96ER3 474 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 CNDP1Q96KN2 507 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 EMILIN2Q9BXX0 1053 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 CSRNP2Q9H175 543 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 EPN3Q9H201 632 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 DNAJC18Q9H819 358 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 CD93Q9NPY3 652 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 DNMT3LQ9UJW3 386 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 LY75O60449 1722 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 DOT1LQ8TEK3 1739 aa5.24□□□□□ -1.57
CCDC88A-209ENST00000456975 SOX1O00570 391 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 SMNDC1O75940 238 aaKnown RBP eCLIP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 C6orf222P0C671 652 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 EPHA1P21709 976 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 PDE6CP51160 858 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 PRELPP51888 382 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 INHBCP55103 352 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 C21orf58P58505 322 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 PLIN5Q00G26 463 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 RELQ04864 619 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 PTPN21Q16825 1174 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 LRRC23Q53EV4 343 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 RNF219Q5W0B1 726 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 INTS3Q68E01 1043 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TRIM68Q6AZZ1 485 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 POMZP3Q6PJE2 187 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 ABRAXAS1Q6UWZ7 409 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TOM1L2Q6ZVM7 507 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 CENPQQ7L2Z9 268 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 RSRC2Q7L4I2 434 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 NECAB2Q7Z6G3 386 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 ZER1Q7Z7L7 766 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC15A3Q8IY34 581 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TMEM192Q8IY95 271 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 PPM1KQ8N3J5 372 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TRIM58Q8NG06 486 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 NPLOC4Q8TAT6 608 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 ATXN2LQ8WWM7 1075 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 CUL5Q93034 780 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 SCLYQ96I15 445 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC6A18Q96N87 628 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 CTAGE1Q96RT6 745 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 NTPCRQ9BSD7 190 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 PARVGQ9HBI0 331 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 KIAA1257Q9ULG3 409 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 ABCC6O95255 1503 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 BCL9O00512 1426 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 GOLGA6L10A6NI86 522 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 GNAT3A8MTJ3 354 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 RBAK-RBAKDNI3L0D1 243 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TNFRSF10CO14798 259 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TEX28O15482 410 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TMCC2O75069 709 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 CAVIN2O95810 425 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 PABPC1P11940 636 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 RPS2P15880 293 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 CPEP16870 476 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 HAAOP46952 286 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 RENBPP51606 427 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 G3BP1Q13283 466 aaKnown RBP eCLIP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TUBA3CQ13748 450 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 IKBKEQ14164 716 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 ZNF827Q17R98 1081 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 WSCD2Q2TBF2 565 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 CDCP2Q5VXM1 449 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 DCAF15Q66K64 600 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 ADALQ6DHV7 355 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 MZT2BQ6NZ67 158 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 FAM180BQ6P0A1 224 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 CORO6Q6QEF8 472 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 CRTC1Q6UUV9 634 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 NSMFQ6X4W1 530 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms