RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W SDS23P53172 527 aa2.63□□□□□ -1.99
UPF3YGR072W TPC1P53257 314 aa2.63□□□□□ -1.99
UPF3YGR072W YLR152CP54072 576 aa2.63□□□□□ -1.99
UPF3YGR072W HAL1Q01766 294 aa2.63□□□□□ -1.99
UPF3YGR072W MRPS16Q02608 121 aa2.63□□□□□ -1.99
UPF3YGR072W SCS7Q03529 384 aa2.63□□□□□ -1.99
UPF3YGR072W GMC1Q04399 608 aa2.63□□□□□ -1.99
UPF3YGR072W YOL107WQ12239 342 aa2.63□□□□□ -1.99
UPF3YGR072W HSP26P15992 214 aaKnown RBP RIP-Chip data2.62□□□□□ -1.99not detected
UPF3YGR072W MET16P18408 261 aaPredicted RBP2.62□□□□□ -1.99
UPF3YGR072W IMP3P32899 183 aaPredicted RBP2.62□□□□□ -1.99
UPF3YGR072W COY1P34237 679 aa2.62□□□□□ -1.99
UPF3YGR072W YPC1P38298 316 aa2.62□□□□□ -1.99
UPF3YGR072W TAE1P38340 232 aa2.62□□□□□ -1.99
UPF3YGR072W ECM34P38728 170 aa2.62□□□□□ -1.99
UPF3YGR072W ALD5P40047 520 aaKnown RBP2.62□□□□□ -1.99
UPF3YGR072W SCC4P40090 624 aa2.62□□□□□ -1.99
UPF3YGR072W SLM1P40485 686 aa2.62□□□□□ -1.99
UPF3YGR072W GDS1P41913 522 aa2.62□□□□□ -1.99
UPF3YGR072W YPT32P51996 222 aaKnown RBP2.62□□□□□ -1.99
UPF3YGR072W NUP84P52891 726 aa2.62□□□□□ -1.99
UPF3YGR072W YNR066CP53752 436 aa2.62□□□□□ -1.99
UPF3YGR072W ALG11P53954 548 aaKnown RBP2.62□□□□□ -1.99
UPF3YGR072W YMR209CQ03648 457 aa2.62□□□□□ -1.99
UPF3YGR072W YLR173WQ06247 608 aa2.62□□□□□ -1.99
UPF3YGR072W HIS1P00498 297 aaKnown RBP2.61□□□□□ -1.99
UPF3YGR072W DAL82P21705 255 aa2.61□□□□□ -1.99
UPF3YGR072W MRPL6P32904 214 aa2.61□□□□□ -1.99
UPF3YGR072W SPT4P32914 102 aaPredicted RBP2.61□□□□□ -1.99
UPF3YGR072W CSE1P33307 960 aa2.61□□□□□ -1.99
UPF3YGR072W RFT1P38206 574 aaPredicted RBP2.61□□□□□ -1.99
UPF3YGR072W PET8P38921 284 aa2.61□□□□□ -1.99
UPF3YGR072W MIC19P43594 170 aa2.61□□□□□ -1.99
UPF3YGR072W TAD2P47058 250 aa2.61□□□□□ -1.99
UPF3YGR072W LSB1P53281 241 aa2.61□□□□□ -1.99
UPF3YGR072W VHS1Q03785 461 aa2.61□□□□□ -1.99
UPF3YGR072W INP2Q03824 705 aa2.61□□□□□ -1.99
UPF3YGR072W API2Q04413 109 aa2.61□□□□□ -1.99
UPF3YGR072W TAF9Q05027 157 aa2.61□□□□□ -1.99
UPF3YGR072W PER33Q12144 273 aa2.61□□□□□ -1.99
UPF3YGR072W CBP6P07253 162 aaPredicted RBP2.6□□□□□ -1.99
UPF3YGR072W PCL1P24867 279 aa2.6□□□□□ -1.99
UPF3YGR072W CDC13P32797 924 aaKnown RBP2.6□□□□□ -1.99
UPF3YGR072W CYM1P32898 989 aa2.6□□□□□ -1.99
UPF3YGR072W TIP20P33891 701 aa2.6□□□□□ -1.99
UPF3YGR072W PRM9P39551 298 aa2.6□□□□□ -1.99
UPF3YGR072W YIL054WP40524 105 aa2.6□□□□□ -1.99
UPF3YGR072W YJL118WP47022 219 aa2.6□□□□□ -1.99
UPF3YGR072W COG7P53195 279 aa2.6□□□□□ -1.99
UPF3YGR072W FMP48P53233 369 aa2.6□□□□□ -1.99
UPF3YGR072W UTP15Q04305 513 aaKnown RBP2.6□□□□□ -1.99
UPF3YGR072W ADH6Q04894 360 aaKnown RBP2.6□□□□□ -1.99
UPF3YGR072W COX20Q04935 205 aa2.6□□□□□ -1.99
UPF3YGR072W DPP1Q05521 289 aa2.6□□□□□ -1.99
UPF3YGR072W PEX30Q06169 523 aa2.6□□□□□ -1.99
UPF3YGR072W YOR376WQ08900 122 aa2.6□□□□□ -1.99
UPF3YGR072W COX2P00410 251 aa2.59□□□□□ -1.99
UPF3YGR072W RAD3P06839 778 aa2.59□□□□□ -1.99
UPF3YGR072W MSF1P08425 469 aa2.59□□□□□ -1.99
UPF3YGR072W AEP1P32493 518 aa2.59□□□□□ -1.99
UPF3YGR072W SUA5P32579 426 aa2.59□□□□□ -1.99
UPF3YGR072W UTH1P36135 365 aa2.59□□□□□ -1.99
UPF3YGR072W MRPL27P36526 146 aaPredicted RBP2.59□□□□□ -1.99
UPF3YGR072W SMP1P38128 452 aa2.59□□□□□ -1.99
UPF3YGR072W HSM3P38348 480 aa2.59□□□□□ -1.99
UPF3YGR072W RRT13P40042 185 aa2.59□□□□□ -1.99
UPF3YGR072W DDI1P40087 428 aa2.59□□□□□ -1.99
UPF3YGR072W COA1P40452 197 aa2.59□□□□□ -1.99
UPF3YGR072W YAR1P46683 200 aa2.59□□□□□ -1.99
UPF3YGR072W TIS11P47977 285 aa2.59□□□□□ -1.99
UPF3YGR072W INP1Q03694 420 aa2.59□□□□□ -1.99
UPF3YGR072W YML018CQ03730 393 aa2.59□□□□□ -1.99
UPF3YGR072W VBA1Q04301 562 aa2.59□□□□□ -1.99
UPF3YGR072W ARC18Q05933 178 aaKnown RBP2.59□□□□□ -1.99
UPF3YGR072W SFH1Q06168 426 aa2.59□□□□□ -1.99
UPF3YGR072W TAZ1Q06510 381 aa2.59□□□□□ -1.99
UPF3YGR072W CTR3Q06686 241 aa2.59□□□□□ -1.99
UPF3YGR072W MIM1Q08176 113 aa2.59□□□□□ -1.99
UPF3YGR072W YOR292CQ08743 309 aa2.59□□□□□ -1.99
UPF3YGR072W RUD3Q12234 484 aaKnown RBP2.59□□□□□ -1.99
UPF3YGR072W SOD1P00445 154 aaKnown RBP2.58□□□□□ -2
UPF3YGR072W POL30P15873 258 aaKnown RBP2.58□□□□□ -2
UPF3YGR072W DAL81P21657 970 aa2.58□□□□□ -2
UPF3YGR072W ZIP1P31111 875 aa2.58□□□□□ -2
UPF3YGR072W TPS2P31688 896 aaKnown RBP2.58□□□□□ -2
UPF3YGR072W IME2P32581 645 aa2.58□□□□□ -2
UPF3YGR072W RPT5P33297 434 aaKnown RBP2.58□□□□□ -2
UPF3YGR072W AIM29P36154 155 aa2.58□□□□□ -2
UPF3YGR072W SHC1P39000 512 aa2.58□□□□□ -2
UPF3YGR072W NPT1P39683 429 aaKnown RBP2.58□□□□□ -2
UPF3YGR072W VAB2P40003 282 aa2.58□□□□□ -2
UPF3YGR072W KRE29P40026 464 aa2.58□□□□□ -2
UPF3YGR072W FMC1P40491 155 aa2.58□□□□□ -2
UPF3YGR072W AGX1P43567 385 aa2.58□□□□□ -2
UPF3YGR072W BNA6P43619 295 aa2.58□□□□□ -2
UPF3YGR072W TIM21P53220 239 aa2.58□□□□□ -2
UPF3YGR072W MRPL50P53724 139 aa2.58□□□□□ -2
UPF3YGR072W TRM44Q02648 567 aaKnown RBP2.58□□□□□ -2
UPF3YGR072W SEC13Q04491 297 aaKnown RBP2.58□□□□□ -2
UPF3YGR072W CTS2Q06350 511 aa2.58□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 28.9 ms