RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C CPT1P17898 393 aa3.81□□□□□ -1.8
CDC9YDL164C SPO11P23179 398 aa3.81□□□□□ -1.8
CDC9YDL164C PHA2P32452 334 aa3.81□□□□□ -1.8
CDC9YDL164C MNS1P32906 549 aa3.81□□□□□ -1.8
CDC9YDL164C TIR2P33890 251 aa3.81□□□□□ -1.8
CDC9YDL164C YHR035WP38769 630 aa3.81□□□□□ -1.8
CDC9YDL164C YPT35P38815 214 aaKnown RBP3.81□□□□□ -1.8
CDC9YDL164C PET8P38921 284 aa3.81□□□□□ -1.8
CDC9YDL164C PEX31P53203 462 aa3.81□□□□□ -1.8
CDC9YDL164C NRD1P53617 575 aaKnown RBP RIP-Chip data3.81□□□□□ -1.8not detected
CDC9YDL164C PRM15Q03262 622 aa3.81□□□□□ -1.8
CDC9YDL164C PEX10Q05568 337 aa3.81□□□□□ -1.8
CDC9YDL164C NNT1Q05874 261 aa3.81□□□□□ -1.8
CDC9YDL164C VPS74Q06385 345 aa3.81□□□□□ -1.8
CDC9YDL164C ESP1Q03018 1630 aa3.81□□□□□ -1.8
CDC9YDL164C MRP1P10662 321 aaKnown RBP3.81□□□□□ -1.8
CDC9YDL164C TFS1P14306 219 aa3.81□□□□□ -1.8
CDC9YDL164C YCR100CP25606 316 aa3.81□□□□□ -1.8
CDC9YDL164C CTS1P29029 562 aa3.81□□□□□ -1.8
CDC9YDL164C PMT2P31382 759 aa3.81□□□□□ -1.8
CDC9YDL164C TPS2P31688 896 aaKnown RBP3.81□□□□□ -1.8
CDC9YDL164C CDC13P32797 924 aaKnown RBP3.81□□□□□ -1.8
CDC9YDL164C COX13P32799 129 aa3.81□□□□□ -1.8
CDC9YDL164C YBR056WP38081 501 aa3.81□□□□□ -1.8
CDC9YDL164C GUF1P46943 645 aa3.81□□□□□ -1.8
CDC9YDL164C TPN1P53099 579 aa3.81□□□□□ -1.8
CDC9YDL164C SSU72P53538 206 aaPredicted RBP3.81□□□□□ -1.8
CDC9YDL164C MRS2Q01926 470 aa3.81□□□□□ -1.8
CDC9YDL164C SNX41Q04053 625 aa3.81□□□□□ -1.8
CDC9YDL164C MHP1P43638 1398 aa3.8□□□□□ -1.8
CDC9YDL164C DNA2P38859 1522 aa3.8□□□□□ -1.8
CDC9YDL164C SWR1Q05471 1514 aa3.8□□□□□ -1.8
CDC9YDL164C TEF1P02994 458 aaKnown RBP3.8□□□□□ -1.8
CDC9YDL164C MRPL8P22353 238 aa3.8□□□□□ -1.8
CDC9YDL164C PHD1P36093 366 aa3.8□□□□□ -1.8
CDC9YDL164C RIM2P38127 377 aa3.8□□□□□ -1.8
CDC9YDL164C SOP4P39543 234 aaPredicted RBP3.8□□□□□ -1.8
CDC9YDL164C HEM14P40012 539 aa3.8□□□□□ -1.8
CDC9YDL164C YLR460CP54007 376 aa3.8□□□□□ -1.8
CDC9YDL164C CCE1Q03702 353 aa3.8□□□□□ -1.8
CDC9YDL164C SEC10Q06245 871 aa3.8□□□□□ -1.8
CDC9YDL164C YLR112WQ12130 139 aa3.8□□□□□ -1.8
CDC9YDL164C TPT1Q12272 230 aaKnown RBP3.8□□□□□ -1.8
CDC9YDL164C LSO2Q3E772 92 aaKnown RBP3.8□□□□□ -1.8
CDC9YDL164C AI5_BETAQ9ZZX0 354 aa3.8□□□□□ -1.8
CDC9YDL164C TSC11P40061 1430 aa3.8□□□□□ -1.8
CDC9YDL164C TIP1P27654 210 aaPredicted RBP3.79□□□□□ -1.8
CDC9YDL164C IDH1P28834 360 aaKnown RBP RIP-Chip data3.79□□□□□ -1.8not detected
CDC9YDL164C OMA1P36163 345 aa3.79□□□□□ -1.8
CDC9YDL164C FIG1P38224 298 aa3.79□□□□□ -1.8
CDC9YDL164C GEP4P38812 185 aa3.79□□□□□ -1.8
CDC9YDL164C CSM2P40465 213 aa3.79□□□□□ -1.8
CDC9YDL164C AGE2P40529 298 aa3.79□□□□□ -1.8
CDC9YDL164C PMT4P46971 762 aa3.79□□□□□ -1.8
CDC9YDL164C ASG7P46993 209 aa3.79□□□□□ -1.8
CDC9YDL164C YPT32P51996 222 aaKnown RBP3.79□□□□□ -1.8
CDC9YDL164C JAC1P53193 184 aa3.79□□□□□ -1.8
CDC9YDL164C YNR066CP53752 436 aa3.79□□□□□ -1.8
CDC9YDL164C ARC18Q05933 178 aaKnown RBP3.79□□□□□ -1.8
CDC9YDL164C MMT2Q08970 484 aa3.79□□□□□ -1.8
CDC9YDL164C YCT1Q12235 531 aa3.79□□□□□ -1.8
CDC9YDL164C SME1Q12330 94 aaPredicted RBP3.79□□□□□ -1.8
CDC9YDL164C WTM1Q12363 437 aaKnown RBP3.79□□□□□ -1.8
CDC9YDL164C YCF1P39109 1515 aaKnown RBP3.79□□□□□ -1.8
CDC9YDL164C HEM1P09950 548 aaPredicted RBP3.79□□□□□ -1.8
CDC9YDL164C SPS100P13130 326 aa3.79□□□□□ -1.8
CDC9YDL164C CDC10P25342 322 aaKnown RBP3.79□□□□□ -1.8
CDC9YDL164C SPS18P32572 300 aa3.79□□□□□ -1.8
CDC9YDL164C SPT4P32914 102 aaPredicted RBP3.79□□□□□ -1.8
CDC9YDL164C JEN1P36035 616 aa3.79□□□□□ -1.8
CDC9YDL164C CIN2P46670 268 aa3.79□□□□□ -1.8
CDC9YDL164C SWF1Q04629 336 aa3.79□□□□□ -1.8
CDC9YDL164C SFH1Q06168 426 aa3.79□□□□□ -1.8
CDC9YDL164C TPO3Q06451 622 aa3.79□□□□□ -1.8
CDC9YDL164C COQ10Q08058 207 aa3.79□□□□□ -1.8
CDC9YDL164C SGT1Q08446 395 aa3.79□□□□□ -1.8
CDC9YDL164C YPL199CQ08954 240 aa3.79□□□□□ -1.8
CDC9YDL164C YOR114WQ12219 294 aa3.79□□□□□ -1.8
CDC9YDL164C DCN1Q12395 269 aa3.79□□□□□ -1.8
CDC9YDL164C POM152P39685 1337 aa3.79□□□□□ -1.8
CDC9YDL164C PUT1P09368 476 aa3.78□□□□□ -1.8
CDC9YDL164C GRX2P17695 143 aaKnown RBP3.78□□□□□ -1.8
CDC9YDL164C RNA15P25299 296 aaPredicted RBP3.78□□□□□ -1.8
CDC9YDL164C VPS51P36116 164 aa3.78□□□□□ -1.8
CDC9YDL164C CBP4P37267 147 aa3.78□□□□□ -1.8
CDC9YDL164C ECM13P38195 257 aa3.78□□□□□ -1.8
CDC9YDL164C MST28P39552 234 aa3.78□□□□□ -1.8
CDC9YDL164C YJR056CP47115 236 aa3.78□□□□□ -1.8
CDC9YDL164C TRM9P49957 279 aa3.78□□□□□ -1.8
CDC9YDL164C ODC1Q03028 310 aa3.78□□□□□ -1.8
CDC9YDL164C SPC2Q04969 178 aa3.78□□□□□ -1.8
CDC9YDL164C FRE8Q12209 686 aa3.78□□□□□ -1.8
CDC9YDL164C YDL199CQ12407 687 aa3.78□□□□□ -1.8
CDC9YDL164C SNQ2P32568 1501 aaKnown RBP3.78□□□□□ -1.8
CDC9YDL164C RPB8P20436 146 aa3.78□□□□□ -1.8
CDC9YDL164C YOX1P34161 385 aa3.78□□□□□ -1.8
CDC9YDL164C GOS1P38736 223 aa3.78□□□□□ -1.8
CDC9YDL164C TDA11P38854 504 aa3.78□□□□□ -1.8
CDC9YDL164C JLP2P40206 208 aa3.78□□□□□ -1.8
CDC9YDL164C GWT1P47026 490 aa3.78□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 21.8 ms