RNA–Protein interactions for RNA: YLR211C

ATG38, Transcript of Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I, yeastyeast

Gene ATG38, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG38YLR211C UTR5P32630 166 aa2.03□□□□□ -2.08
ATG38YLR211C ECM14P38836 430 aa2.03□□□□□ -2.08
ATG38YLR211C LIN1P38852 340 aaPredicted RBP2.03□□□□□ -2.08
ATG38YLR211C VPS45P38932 577 aa2.03□□□□□ -2.08
ATG38YLR211C MNN9P39107 395 aaKnown RBP2.03□□□□□ -2.08
ATG38YLR211C SSO2P39926 295 aa2.03□□□□□ -2.08
ATG38YLR211C YHC3P47040 408 aa2.03□□□□□ -2.08
ATG38YLR211C PNC1P53184 216 aaKnown RBP2.03□□□□□ -2.08
ATG38YLR211C STE23Q06010 1027 aa2.03□□□□□ -2.08
ATG38YLR211C YLR413WQ06689 675 aa2.03□□□□□ -2.08
ATG38YLR211C GCD2P12754 651 aaPredicted RBP2.02□□□□□ -2.09
ATG38YLR211C GAL3P13045 520 aa2.02□□□□□ -2.09
ATG38YLR211C UTR1P21373 530 aa2.02□□□□□ -2.09
ATG38YLR211C HXT2P23585 541 aa2.02□□□□□ -2.09
ATG38YLR211C YUH1P35127 236 aa2.02□□□□□ -2.09
ATG38YLR211C YKL071WP36086 256 aa2.02□□□□□ -2.09
ATG38YLR211C ALP1P38971 573 aa2.02□□□□□ -2.09
ATG38YLR211C SMC2P38989 1170 aaKnown RBP2.02□□□□□ -2.09
ATG38YLR211C END3P39013 349 aa2.02□□□□□ -2.09
ATG38YLR211C AGX1P43567 385 aa2.02□□□□□ -2.09
ATG38YLR211C EGD1Q02642 157 aaKnown RBP2.02□□□□□ -2.09
ATG38YLR211C RRN5Q02983 363 aa2.02□□□□□ -2.09
ATG38YLR211C RRB1Q04225 511 aaKnown RBP2.02□□□□□ -2.09
ATG38YLR211C ECM18Q04623 453 aa2.02□□□□□ -2.09
ATG38YLR211C RNH1Q04740 348 aa2.02□□□□□ -2.09
ATG38YLR211C NAT4Q04751 285 aa2.02□□□□□ -2.09
ATG38YLR211C YLR297WQ05899 129 aa2.02□□□□□ -2.09
ATG38YLR211C ARR1Q06596 294 aa2.02□□□□□ -2.09
ATG38YLR211C RRT8Q08219 342 aa2.02□□□□□ -2.09
ATG38YLR211C CDC37P06101 506 aaKnown RBP2.01□□□□□ -2.09
ATG38YLR211C RAD1P06777 1100 aa2.01□□□□□ -2.09
ATG38YLR211C HPR1P17629 752 aaKnown RBP2.01□□□□□ -2.09
ATG38YLR211C MXR2P25566 168 aa2.01□□□□□ -2.09
ATG38YLR211C MIG1P27705 504 aa2.01□□□□□ -2.09
ATG38YLR211C SWC5P38326 303 aa2.01□□□□□ -2.09
ATG38YLR211C YNL320WP42840 284 aa2.01□□□□□ -2.09
ATG38YLR211C ASG7P46993 209 aa2.01□□□□□ -2.09
ATG38YLR211C YGL185CP53100 379 aa2.01□□□□□ -2.09
ATG38YLR211C YGL114WP53134 725 aa2.01□□□□□ -2.09
ATG38YLR211C YGR266WP53326 701 aa2.01□□□□□ -2.09
ATG38YLR211C CAB5Q03941 241 aa2.01□□□□□ -2.09
ATG38YLR211C YMR310CQ04867 317 aaPredicted RBP2.01□□□□□ -2.09
ATG38YLR211C KAP95Q06142 861 aaKnown RBP2.01□□□□□ -2.09
ATG38YLR211C YPL264CQ08980 353 aa2.01□□□□□ -2.09
ATG38YLR211C SGT2Q12118 346 aaKnown RBP2.01□□□□□ -2.09
ATG38YLR211C GLE1Q12315 538 aa2.01□□□□□ -2.09
ATG38YLR211C SPO24Q3E752 67 aa2.01□□□□□ -2.09
ATG38YLR211C YIL002W-AQ3E7Z5 69 aa2.01□□□□□ -2.09
ATG38YLR211C MAS1P10507 462 aa2□□□□□ -2.09
ATG38YLR211C THR4P16120 514 aaKnown RBP2□□□□□ -2.09
ATG38YLR211C PET18P25362 215 aa2□□□□□ -2.09
ATG38YLR211C MRPL37P36532 105 aa2□□□□□ -2.09
ATG38YLR211C YBL028CP38202 106 aa2□□□□□ -2.09
ATG38YLR211C PRP39P39682 629 aaKnown RBP2□□□□□ -2.09
ATG38YLR211C SCC4P40090 624 aa2□□□□□ -2.09
ATG38YLR211C GCD14P46959 383 aaPredicted RBP2□□□□□ -2.09
ATG38YLR211C YGL088WP53151 121 aa2□□□□□ -2.09
ATG38YLR211C FMP48P53233 369 aa2□□□□□ -2.09
ATG38YLR211C DBP6P53734 629 aaKnown RBP2□□□□□ -2.09
ATG38YLR211C YNL146WP53906 100 aa2□□□□□ -2.09
ATG38YLR211C RNR2P09938 399 aaKnown RBP1.99□□□□□ -2.09
ATG38YLR211C UGA1P17649 471 aa1.99□□□□□ -2.09
ATG38YLR211C ARF2P19146 181 aaKnown RBP1.99□□□□□ -2.09
ATG38YLR211C YPS1P32329 569 aa1.99□□□□□ -2.09
ATG38YLR211C HMX1P32339 317 aa1.99□□□□□ -2.09
ATG38YLR211C YKL070WP36087 169 aa1.99□□□□□ -2.09
ATG38YLR211C RFT1P38206 574 aaPredicted RBP1.99□□□□□ -2.09
ATG38YLR211C RCK1P38622 512 aa1.99□□□□□ -2.09
ATG38YLR211C DSE1P40077 573 aa1.99□□□□□ -2.09
ATG38YLR211C RIB4P50861 169 aaPredicted RBP1.99□□□□□ -2.09
ATG38YLR211C MND1P53102 219 aa1.99□□□□□ -2.09
ATG38YLR211C MIX17Q03667 156 aa1.99□□□□□ -2.09
ATG38YLR211C CSI1Q04368 295 aa1.99□□□□□ -2.09
ATG38YLR211C MIM1Q08176 113 aa1.99□□□□□ -2.09
ATG38YLR211C TY3A-GQ12173 290 aa1.99□□□□□ -2.09
ATG38YLR211C TY3A-IQ99219 290 aa1.99□□□□□ -2.09
ATG38YLR211C TDH2P00358 332 aaKnown RBP1.98□□□□□ -2.09
ATG38YLR211C TDH3P00359 332 aaKnown RBP RIP-Chip data1.98□□□□□ -2.09not detected
ATG38YLR211C YLL053CP0CD98 152 aa1.98□□□□□ -2.09
ATG38YLR211C RPL18AP0CX49 186 aaKnown RBP1.98□□□□□ -2.09
ATG38YLR211C RPL18BP0CX50 186 aaKnown RBP1.98□□□□□ -2.09
ATG38YLR211C CTA1P15202 515 aa1.98□□□□□ -2.09
ATG38YLR211C CIN8P27895 1000 aa1.98□□□□□ -2.09
ATG38YLR211C ARO4P32449 370 aaKnown RBP1.98□□□□□ -2.09
ATG38YLR211C COT1P32798 439 aa1.98□□□□□ -2.09
ATG38YLR211C RPT5P33297 434 aaKnown RBP1.98□□□□□ -2.09
ATG38YLR211C BUD2P33314 1104 aa1.98□□□□□ -2.09
ATG38YLR211C EBP2P36049 427 aaKnown RBP1.98□□□□□ -2.09
ATG38YLR211C NUP84P52891 726 aa1.98□□□□□ -2.09
ATG38YLR211C CAX4P53223 239 aa1.98□□□□□ -2.09
ATG38YLR211C MPP6P53725 186 aaPredicted RBP1.98□□□□□ -2.09
ATG38YLR211C YPL113CQ02961 396 aa1.98□□□□□ -2.09
ATG38YLR211C TLG1Q03322 224 aa1.98□□□□□ -2.09
ATG38YLR211C DXO1Q06349 442 aa1.98□□□□□ -2.09
ATG38YLR211C VAC14Q06708 880 aa1.98□□□□□ -2.09
ATG38YLR211C APC5Q08683 685 aa1.98□□□□□ -2.09
ATG38YLR211C YOL107WQ12239 342 aa1.98□□□□□ -2.09
ATG38YLR211C TDH1P00360 332 aaKnown RBP1.97□□□□□ -2.09
ATG38YLR211C CAR2P07991 424 aaKnown RBP1.97□□□□□ -2.09
ATG38YLR211C MET2P08465 486 aa1.97□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 23.1 ms