RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ZNF568Q3ZCX4 644 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 FYB2Q5VWT5 728 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 KCNK18Q7Z418 384 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 TRIM51Q9BSJ1 452 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 LRRD1A4D1F6 860 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 NFIBO00712 420 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 SFNP31947 248 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 SYCP2LQ5T4T6 812 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 NT5DC1Q5TFE4 455 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 TRIM50Q86XT4 487 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 ZNF280CQ8ND82 737 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 SNX12Q9UMY4 172 aa9.6□□□□□ -0.87
PDLIM5-222ENST00000615540 GNA15P30679 374 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 RHBDL3P58872 404 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 BPIFB4P59827 614 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 RINT1Q6NUQ1 792 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 GMCL1P1Q8NEA9 526 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 TRIM7Q9C029 511 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 MKRN1Q9UHC7 482 aaKnown RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 CACNA1FO60840 1977 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 ANO9A1A5B4 782 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 EVI5O60447 810 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 CAP2P40123 477 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 ZKSCAN8Q15776 578 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 RIN2Q8WYP3 895 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 RNF25Q96BH1 459 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 DNAJC7Q99615 494 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 CALN1Q9BXU9 219 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 FAM198AQ9UFP1 575 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 PCDHA10Q9Y5I2 948 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 ESYT2A0FGR8 921 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 STK10O94804 968 aaKnown RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 PSMA2P25787 234 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 RWDD2BP57060 319 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 HDLBPQ00341 1268 aaKnown RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 SMAD1Q15797 465 aaKnown RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 AMIGO3Q86WK7 504 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 SYT2Q8N9I0 419 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 POP1Q99575 1024 aaKnown RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 DEFB129Q9H1M3 183 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 APEX2Q9UBZ4 518 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 A0A1W2PQJ5 194 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 CAPN9O14815 690 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 ABL1P00519 1130 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 RPA1P27694 616 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 PDCLQ13371 301 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 CCDC6Q16204 474 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 ZNF699Q32M78 642 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 CFAP157Q5JU67 520 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 SPATA4Q8NEY3 305 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 FBF1Q8TES7 1133 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 FMO2Q99518 471 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 RBAKQ9NYW8 714 aaPredicted RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 AMACRQ9UHK6 382 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 THOC1Q96FV9 657 aaKnown RBP9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.59□□□□□ -0.874e-6■□□□□ 11.2
PDLIM5-222ENST00000615540 INTS13Q9NVM9 706 aa9.59□□□□□ -0.87
PDLIM5-222ENST00000615540 PON1P27169 355 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 YWHAGP61981 247 aaKnown RBP eCLIP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 PRKCEQ02156 737 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 PPP2R5CQ13362 524 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 SLC18A3Q16572 532 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 Q4G0T1 1027 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 KLHDC7AQ5VTJ3 777 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 DARS2Q6PI48 645 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 TRIM11Q96F44 468 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 PODXL2Q9NZ53 605 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 MAD1L1Q9Y6D9 718 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 RBAK-RBAKDNI3L0D1 243 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 NR1D1P20393 614 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 SAT1P21673 171 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 RPS6P62753 249 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 BASP1P80723 227 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 IFT88Q13099 833 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 SNRNP35Q16560 246 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 KRT39Q6A163 491 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 ADAM22Q9P0K1 906 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 TBX3O15119 743 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 ECM1Q16610 540 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 TKFCQ3LXA3 575 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 ERICH1Q86X53 443 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 RHOT2Q8IXI1 618 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 SCFD1Q8WVM8 642 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 HESX1Q9UBX0 185 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 AGO2Q9UKV8 859 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 SPEF2Q9C093 1822 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 FGFR4P22455 802 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 GALCP54803 685 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 TMEM62Q0P6H9 643 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 CEP128Q6ZU80 1094 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 NEK9Q8TD19 979 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 ODF2LQ9ULJ1 636 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 TTC7AQ9ULT0 858 aaPredicted RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 RRP15Q9Y3B9 282 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 DISP2A7MBM2 1401 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 A6NJR5 290 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 HNRNPH2P55795 449 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 CCNA1P78396 465 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 EMC2Q15006 297 aa9.58□□□□□ -0.88
PDLIM5-222ENST00000615540 TAF12Q16514 161 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms